Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3061 ATGGGTGTCAAGAATCTATGGGACATCCTCGAATCATGCAAGAAAACGGTTCCCCTTCACCATCTCCAGAACAAGAGGGTGTGCGTGGATCTCTCGTGCTGGATGGTGCAGCTTCAGAGTGTGAGCAAGTCACACGCTTGTATGAAGGAGAAGGTGTACCTCAGAGGCCTCTTTCACCGCCTCAGAGCTCTCATTGCTCTTAATTGCAACGTTGTTTTCGTTGCAGATGGGTCAATTCCTGCTATCAAGTTATCAACTTATTGGCGTCGCTTGAACATCAGGAAAGAGGTAGAAAAAAATGAAACTAACTTACAGGAAGTGAAATCATTAAGAAGAAACATGGGGTCTGAATTTTCTTGCATGATAAAAGAGGCTAAAGCCTTGGGGATGGCTCTTGGCATTTCTTGTTTGAATGGGATTGAAGAAGCCGAAGCTCAGTGTGCTTTGTTGAGCTTTGAGTCATTATGTGATGGGTGTTTCAGTTCAGATTCAGATATATTCCTTTTTGGTGCAAGGACGGTGTATAGGGATATCTGCCTCGGAGATGGTGGATATGTTATTTGTTATGAGATGGCAGACATTGAAAGCAAACTCGGATTTGGAAGGGATTCATTGATTGCTCTCTCATTACTTCTTGGCAGTGACTATTATCAAGGAGTTCATGGTCTTGGTCCGGAGTCAGCTTGTCAGATAGTTAGATCAATTGGGGACAGATTTGTTCTTAAAAAGATTGCTTCGGAGGGGCTTGAATGGGTGAAAAAAAGAAAAGGAGATGTGAATAATTTACAGAAAGATGATAATGTTTTGCAAGTGATTAATGCTTATATGAAGCCAAAATGCCACTCCGCAGATTCAGATGTTGTCCACAGGGCTCTTGCTCAGTACCAGTTTCAACGCCCTAAACTCCATCAGATATGTGCCGAATTCTTTGAGTGGCCTTCAGAGAAAACAGGTTCTTCATCTACTTCGATATATTCTTATAAGTCAATATTTTATGCTTTGGTTGGACCCTTTGTTATAATAAATAATAATGCCTTATCATCTTATTAG 1050 0.4124 MGVKNLWDILESCKKTVPLHHLQNKRVCVDLSCWMVQLQSVSKSHACMKEKVYLRGLFHRLRALIALNCNVVFVADGSIPAIKLSTYWRRLNIRKEVEKNETNLQEVKSLRRNMGSEFSCMIKEAKALGMALGISCLNGIEEAEAQCALLSFESLCDGCFSSDSDIFLFGARTVYRDICLGDGGYVICYEMADIESKLGFGRDSLIALSLLLGSDYYQGVHGLGPESACQIVRSIGDRFVLKKIASEGLEWVKKRKGDVNNLQKDDNVLQVINAYMKPKCHSADSDVVHRALAQYQFQRPKLHQICAEFFEWPSEKTGSSSTSIYSYKSIFYALVGPFVIINNNALSSY* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3061 349 PANTHER FLAP ENDONUCLEASE GEN HOMOLOG 1 1 317 - -
Dod02g3061 349 SUPERFAMILY PIN domain-like 3 215 IPR029060 -
Dod02g3061 349 Gene3D - 201 270 - -
Dod02g3061 349 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Dod02g3061 349 SMART xpgineu 130 200 IPR006086 GO:0004518
Dod02g3061 349 CDD PIN_GEN1 2 198 - -
Dod02g3061 349 Pfam XPG N-terminal domain 1 96 IPR006085 GO:0004518
Dod02g3061 349 Gene3D - 2 199 - -
Dod02g3061 349 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 318 IPR036279 -
Dod02g3061 349 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 317 IPR006084 -
Dod02g3061 349 SMART xpgn3 1 97 IPR006085 GO:0004518
Dod02g3061 349 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Dod02g3061 349 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Dod02g3061 349 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Dod02g3061 349 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Dod02g3061 349 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3061 1 236 Core DNA Replication Machinery Family AT5G26680 25.882 1.02e-14 72.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3061 K15338 - gmx:100806919 571.237