Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3058 ATGAGGTGTCAGCAAATAGAGAAAGCAAAACCAAAATACAGAAAGGGCTTATGGTCACCTGAAGAAGATAATAAGCTCAGAAACTATATCCTAAAGCATGGTCATGGCTGCTGGAGCTCTGTCCCCATTAAGGCAGGCTTGCAAAGGAATGGAAAAAGCTGCAGACTAAGGTGGATTAACTACCTGAGGCCAGGGTTAAAGAGAGGGATGTTCAGCAAACAAGAGGAAGATACAATCCTGAACCTTCACCACATGTTGGGAAACAAGTGGTCTCAGATAGCACAACATTTGCCAGGGAGGACTGACAATGAGATAAAAAACTACTGGCATTCATATTTGAAAAAGAAAGTGGCCAAAGCAAAAGAAATAATGGAACCTAATCAGCAAGTTCAATATGCTTGCTCAAGCTCAGATACAATGGACAATACATTCTCTCCCCAGAAGCCTGTAATTCATGATCCAAGTTATGGATTGTTAGATAACTTGGAAAAATCAGGAGCACATTCTGATCACTCTTATGAACATAATTATAGCTTCTCCAACGAGGCTTGCAATCAGGGCTCCTTACCAAAACTGTTATTTGCTGAGTGGCTTTCACTGGATCATGTAAATGGTGGAGGGGGGTCTGTGAATTCATCAGATGAATCTTTGGTATTGGGGAATGGGTTTGATCAAAATTCAACATTTCAAGAAGCTGTGATGCATATGTCAGAAGGACCCTTTTGTGGGGAGTATCATAATAGTTCTATGGATCATAACAGTCTAACTGAAAGTTCAGCGATTGAGGTGTACAATTCACAGCTCAAGTTTTCAAATCAAGTAGTTGGAAATGACTTCTTGCAACCTTGTATCCCTGGGGCTGATTTGTGTAACAATTTCAGCCTCAACAATGATGCAATGTATGTATAA 909 0.4037 MRCQQIEKAKPKYRKGLWSPEEDNKLRNYILKHGHGCWSSVPIKAGLQRNGKSCRLRWINYLRPGLKRGMFSKQEEDTILNLHHMLGNKWSQIAQHLPGRTDNEIKNYWHSYLKKKVAKAKEIMEPNQQVQYACSSSDTMDNTFSPQKPVIHDPSYGLLDNLEKSGAHSDHSYEHNYSFSNEACNQGSLPKLLFAEWLSLDHVNGGGGSVNSSDESLVLGNGFDQNSTFQEAVMHMSEGPFCGEYHNSSMDHNSLTESSAIEVYNSQLKFSNQVVGNDFLQPCIPGADLCNNFSLNNDAMYV* 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3058 302 CDD SANT 71 113 IPR001005 -
Dod02g3058 302 CDD SANT 18 62 IPR001005 -
Dod02g3058 302 PANTHER MYB DOMAIN PROTEIN 55 1 296 - -
Dod02g3058 302 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Dod02g3058 302 Gene3D - 15 67 - -
Dod02g3058 302 Gene3D - 69 136 - -
Dod02g3058 302 PANTHER MYB TRANSCRIPTION FACTOR 1 296 - -
Dod02g3058 302 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Dod02g3058 302 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Dod02g3058 302 Pfam Myb-like DNA-binding domain 68 113 IPR001005 -
Dod02g3058 302 SUPERFAMILY Homeodomain-like 13 109 IPR009057 -
Dod02g3058 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 62 IPR017930 -
Dod02g3058 302 SMART sant 14 64 IPR001005 -
Dod02g3058 302 SMART sant 67 115 IPR001005 -
Dod02g3058 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3058 Dod-Chr2 64790661 64793273 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3058 8 118 MYB Transcription Factor Family AT3G48920 74.775 2.23e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g3058 Myb_DNA-binding 2.4e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3058 K09422 - gmx:100803537 429.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3058 02 64790661 64793273 Dod02g3058 02 64790661 64793273 ECH