Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3055 ATGGGGAAAGCACCATGTTGTGATAAACAAAGAGTGAAAAGGGGTGCTTGGACTCCTGAAGAAGATGAAGCATTGGTTGAGTACATTAAGAAGCATGGCCATGGAAGTTGGCGCACACTCCCCAACCATGCAGGCCTCCTTCGATGTGGGAAAAGTTGTCGGCTTCGTTGGATAAATTATCTTCGCCCTGACATAAAGCGTGGCCCATTTACTACTGAGGAAGAGAGTACAATTACTCAACTTCATGGCATGCTTGGCAACAGGTGGGCTGCTATAGCATCCCAACTTCCAGGAAGAACCGACAATGAAATCAAGAACTATTGGAACACACAACTGAGGAAGCGCCTACCTCAGTCCTCTTCCACTCCTGATCATAGGATTGTTAAATCCGAATCTCCTCTTACACGCCACATGGTACAATGGGAAAGTGCCAGAGTTGAGGCTGAGGCAAGGTTGTCAATGGAATCCTCATTGCATAATTCATGGTCAACATCAAGGGAAACATACCCGGATCACTTTCTTCAACTTTGGCATTCTGAGGTTGGACAATCATTTCGGTTGATCAAGGGAAAAGGAGGCGTAGGAGTGAGTCAAAGCCTTGTCACACCAGCATCATCATCAGCATCAAAATTGGAGTCATGTTCTGATGTCTCATTGAAGGAGAAAAACACTAGAAGCAGTGCTTTCGCAAACAAGAAACAAGAACAAGCAAGTAGCTATAAAACAAAGCTTGAAGATGGCACAGCAGAGTCAGAATTGGGCTATTATGAATTTCTTGAAAATTCTGAAAATGCATTAAATCATTTGCTAGATGACCCTGATGGTGAAGCATTATTCTTCGGACAGACTGAAAGTTTTCTCAATACCCTTGATGGTAGATGTGACTAA 888 0.4358 MGKAPCCDKQRVKRGAWTPEEDEALVEYIKKHGHGSWRTLPNHAGLLRCGKSCRLRWINYLRPDIKRGPFTTEEESTITQLHGMLGNRWAAIASQLPGRTDNEIKNYWNTQLRKRLPQSSSTPDHRIVKSESPLTRHMVQWESARVEAEARLSMESSLHNSWSTSRETYPDHFLQLWHSEVGQSFRLIKGKGGVGVSQSLVTPASSSASKLESCSDVSLKEKNTRSSAFANKKQEQASSYKTKLEDGTAESELGYYEFLENSENALNHLLDDPDGEALFFGQTESFLNTLDGRCD* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3055 295 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Dod02g3055 295 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Dod02g3055 295 CDD SANT 69 110 IPR001005 -
Dod02g3055 295 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Dod02g3055 295 CDD SANT 16 61 IPR001005 -
Dod02g3055 295 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Dod02g3055 295 SMART sant 66 114 IPR001005 -
Dod02g3055 295 SMART sant 13 63 IPR001005 -
Dod02g3055 295 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 282 - -
Dod02g3055 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Dod02g3055 295 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Dod02g3055 295 Gene3D - 14 66 - -
Dod02g3055 295 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Dod02g3055 295 Gene3D - 69 137 - -
Dod02g3055 295 MobiDBLite consensus disorder prediction 225 244 - -
Dod02g3055 295 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3055 Dod-Chr2 64764597 64766703 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3055 1 274 MYB Transcription Factor Family AT3G61250 52.098 2.39e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g3055 Myb_DNA-binding 2.4e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3055 K09422 - gmx:100782075 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3055 02 64764597 64766703 Dod06g0771 06 9362969 9365389 ECH
Dod02g3055 02 64764597 64766703 Dod02g3055 02 64764597 64766703 ECH