Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3027 ATGCCAGAACCCTGTGAAGAAAATTCTGACCTTCCTTACAAGTCAAAGCCACAGGAGGAACATGGTTTTGCCATGGATTTTGATGTATACCTTGAAAATTCATGGCCCTTTGATCACATCACTTCTGCTTCCAACCCCATGTCTCCTTTTCTCATAACAACCTCCTCTGAGCAACCTTTTTCTCCTCTCTGGGCTTTTTCTGATGTTGAAGTTGACAACAAGCATGTTAGAATTGAAGGTTATTCAAATACAGTGACTGAAAATCCAGTTGAAAATGATGACAGCCAAAAACTTGTGTCACCCCTTCTGCCTCTTCCACCTTTAAAAGTTCCAGATGGTTATTTCCTAATTAAGGAAAGAATGACACAAGCACTTCGCTACTTCAAAGAGTTGACTGAACAGAATTTTCTGGCTCAGGTTTGGGTACCTGTTAGGAATGGGAACCGGTATGCTCTCACAACTTCAGGCCAACCGTTTGTTCTTGATCCACGCAGTAATGGACTCCATCAGTATAGAACAGTCTCCCTTACGTATATGTTTTCTGTGGATGGGGAGAACGATGAAATCCTGGGACTTCCTGGTCGAGTTTTTCAGCAGAAATTACCAGAATGGACTCCGGATGTTCAGTATTATTCTAGTAAAGAGTATTCGCGCCTAAATCATGCTCAACATTACAATGTTCATGGAACCTTGGCTTTGCCTGTGTTTGAACCTTCAGGGCAATCATGTGTTGGTGTACTGGAGTTGATAATGACTTCAAAGAAGGTTAACTATGCTCCTGAGGTTGATAAAGTCTGCAAAGCCCTTGAGGCTGTAGATTTGAGGAGTTCAGAAATTCTGGAGCATCCATACACTCAGATTTGTAACGAAGGTCGGCAGAATGCATTAGCAGAGATTTTGGAGATATTGACAATTGTATGTGAAACTCATAATTTACCTCTAGCCCAAACATGGGTTCCCTGCAGGCATCGCAATGTTTTGGCTCATGGTGGTGGTCTTAAGAAAAGCTGTTCTAGTTTTGATGGTCACTGCATGGGGCAAGTTTGCATGTCGACATCTGACGTAGCGTTCTATGTCATTGATGCTCATACATGGGGTTTCCACGAGGCTTGTTCTGAGCATCATTTACAACAAGGTCAAGGGGTTGCTGGGAGGGCATTTTCATCCCACAACATGTGCTTCTGTGGAAACATAACTCAATTCTGCAAAACTGATTATCCCTTAGTACATTATGCTCTCATGTTTGGGTTAACCAGCTGTTTTGCAATCTGTTTACAAAGCTCCCATACTGGAAATGATGATTATGTATTAGAGTTTTTTCTGCCTCCTAAGATCACAGACTTCTATGAACAAAAGGCTTTGTTGGGATCCATATTGACAACAATGAAGCAGCATTTCCAGAGTCTTAACATTGCTGCTGATGTTGAACTTGAGGATGGTTTTTCAATTGAAGTTATAGAAGCAATAAATGAAAGACTTCATTTGAGCCTTGAATCTATTCCAATTGTTCAATCTGCATCTGCTAAATCACCACCTAGACTTGATGCCTCACCAAATAAGGGTGAGGGAGTGCCACAAGGTCCATCAGGACAGCAAATCATGACATACTTTGATGAAATAAACAATGGAGGGAGTATTGGCGATAATGCAGGTGGAAGCATTGATCGGATCTCTTCCATAGAGGCTAAAACCAAAAAGAAACCCTCGGAAAGAAAACGCGGAAAAGCCGAGAAAACAATTAGTCTCGAAGTTTTGCAACGTTATTTCACTGGGAGTCTCAAGGATGCTGCGAAGAGCCTTGGTGTTTGCCCTACTACTATGAAGCGCATATGTAGGCAGCATGGGATATCCCGTTGGCCGTCTCGAAAGATCAACAAGGTTAACCGTTCCTTGTCCAAGCTCAAATGTGTTATGGAATCAGTCCAAGGTGCTGAAGGAGCATTTGGTTTGAACTCTGATAGTAAGAGTTCATTTCCCATTGCCGCTGGTCCCTTTACTGGGCCTTCTACTTCAAAAATGTTCAGCCACAAGGCCCCATCAAGCATTAGGCCATCAGAACCTCATATGAATGAAAATGAATTGGATAACTCTAGAGTATCAGAAACAAACAGACAGGCAGGTAAGGAAGATCAATTTCTAGGAGGGACACAAAGTCCTGAGAAGGTGATTAATGCAGAAGTCAGGTCCACTCGGGGGGTTGGCAGTAAAGGCCAAGACAGGTTTAGAAATGCGAGTGGCTCAAGTGAAGATAGTGCAAATCTTAATCCTCATGGTTCATGCCATGGTAGTAGTCCCCCACATGAAAGTTCACCAGCGAAAGATATATCTAGAGCATTCAACAATGAGCAACATATTGTGTTAAGGGGCTCAGTGGAGTCAACAGTGCAGCCAACTAACATGCTAAACTGTGCGACTCCATACACTCTGCTTAATGTGGACGCAACAGAACCTCTAGAACCATTTGGCAGAATGCTAATTGAGGGTGTTGGTAGTTCTAAAGACTTGAGAAACTTGTGCCCTTCAGCAGATGCTGTTTTGGAGGATCAGGCTGTGGAAGCTTGTGGGGTTAATCCTCGATGTCCTGATTTGGCTCCTAAGCAAAGCATGGAAACTACTCTCAATAACAACACTATGACACCTTTTGCAGCTAGGAGAGAGATGAAGAGTGTGACTATTAAGGCAACATATAGAGAAGATATCATAAGGTTCAGGGTGTCTTTGAACTGTGGCATTGTGGAGTTGCAAGAAGAAATTTCCAAGAGATTGAAACTAGAAGTGGGTGCATTTGATATCAAGTATCTGGATGATGATAATGAATGGGTTTTGATATCATGTGATGCGGACCTGCAGGAGTGCATGGACATTTTAACATCATCTGGAAGCAACATGATCAGGCTTGTGGTGCATGATATAGTGTCCATTCTTGGAAGCTCTTGTGAGAGCTCTGGAGATTGA 2955 0.4261 MPEPCEENSDLPYKSKPQEEHGFAMDFDVYLENSWPFDHITSASNPMSPFLITTSSEQPFSPLWAFSDVEVDNKHVRIEGYSNTVTENPVENDDSQKLVSPLLPLPPLKVPDGYFLIKERMTQALRYFKELTEQNFLAQVWVPVRNGNRYALTTSGQPFVLDPRSNGLHQYRTVSLTYMFSVDGENDEILGLPGRVFQQKLPEWTPDVQYYSSKEYSRLNHAQHYNVHGTLALPVFEPSGQSCVGVLELIMTSKKVNYAPEVDKVCKALEAVDLRSSEILEHPYTQICNEGRQNALAEILEILTIVCETHNLPLAQTWVPCRHRNVLAHGGGLKKSCSSFDGHCMGQVCMSTSDVAFYVIDAHTWGFHEACSEHHLQQGQGVAGRAFSSHNMCFCGNITQFCKTDYPLVHYALMFGLTSCFAICLQSSHTGNDDYVLEFFLPPKITDFYEQKALLGSILTTMKQHFQSLNIAADVELEDGFSIEVIEAINERLHLSLESIPIVQSASAKSPPRLDASPNKGEGVPQGPSGQQIMTYFDEINNGGSIGDNAGGSIDRISSIEAKTKKKPSERKRGKAEKTISLEVLQRYFTGSLKDAAKSLGVCPTTMKRICRQHGISRWPSRKINKVNRSLSKLKCVMESVQGAEGAFGLNSDSKSSFPIAAGPFTGPSTSKMFSHKAPSSIRPSEPHMNENELDNSRVSETNRQAGKEDQFLGGTQSPEKVINAEVRSTRGVGSKGQDRFRNASGSSEDSANLNPHGSCHGSSPPHESSPAKDISRAFNNEQHIVLRGSVESTVQPTNMLNCATPYTLLNVDATEPLEPFGRMLIEGVGSSKDLRNLCPSADAVLEDQAVEACGVNPRCPDLAPKQSMETTLNNNTMTPFAARREMKSVTIKATYREDIIRFRVSLNCGIVELQEEISKRLKLEVGAFDIKYLDDDNEWVLISCDADLQECMDILTSSGSNMIRLVVHDIVSILGSSCESSGD* 985
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3027 984 MobiDBLite consensus disorder prediction 661 774 - -
Dod02g3027 984 CDD PB1_NLP 890 970 IPR034891 -
Dod02g3027 984 Pfam RWP-RK domain 579 627 IPR003035 -
Dod02g3027 984 Pfam PB1 domain 890 970 IPR000270 GO:0005515
Dod02g3027 984 MobiDBLite consensus disorder prediction 740 774 - -
Dod02g3027 984 SUPERFAMILY CAD & PB1 domains 886 974 - -
Dod02g3027 984 MobiDBLite consensus disorder prediction 506 528 - -
Dod02g3027 984 SMART PB1_new 889 971 IPR000270 GO:0005515
Dod02g3027 984 PANTHER PROTEIN NLP8 6 983 IPR045012 GO:0003700
Dod02g3027 984 MobiDBLite consensus disorder prediction 688 705 - -
Dod02g3027 984 Gene3D - 886 970 - -
Dod02g3027 984 PANTHER PLANT REGULATOR RWP-RK FAMILY PROTEIN 6 983 - -
Dod02g3027 984 ProSiteProfiles PB1 domain profile. 889 971 IPR000270 GO:0005515
Dod02g3027 984 ProSiteProfiles RWP-RK domain profile. 564 647 IPR003035 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3027 Dod-Chr2 63856510 63861213 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3027 853 982 NLP Transcription Factor Family AT1G64530 45.098 2.97e-28 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Dod02g3027 PB1 6.8e-20 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3027 - - gmx:100780901 1439.48
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3027 02 63856510 63861213 Dod06g0800 06 9809514 9814058 PCT