Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3002 ATGTCATCGCCGGGATTCCCCGGCGCTGGAGCATCGGAGTTCTTCGCAGGAGCAGCCCGATCAACCACCATGAACAACCCCAACGCCGCCGCCGCAACCGCCACCAACAGCAACCACCGGTTCCACCCTCTCTACCGAAACCAGCAACAACTACCCGCACTCTTTCTAGATCCTTCATCTCAGATCGCACCTCGCCAAGTACAAGCACCAACACCAACAACAACCCTCGGCAAACGCACCCTCGCCGAATTCCAACAACAAAACCACCTCCTCAACCACAACAACAACCTTAACAATAACAACCTTAACCACAACCATGTTCTTTCAAACCTCCTACTCCGCTCCGTGAAGCCCAGAACGGCGACGTTTCACAGCGCTACTAATTCCCCTTTGTCCCCCTTGGATTTCTCAATCCCCGAATTGCAAAACCCTTCATCTTCTTCTTCTTCTCATGGCTTCCCAACGCAGCGTTTTGGCATGCCCCTCCTCCACCAGCTTCGCCCCAACCCCATTAACCTTCCTAACCACACCACCACCTATACCAACACCACCACCACCACCAACAACAACATGGGTTTACCTATCACAAACTCGGTTCTCCAGAACCCGAATTTCCCATACCGGAGCTCCAATTTGGGTCAGCCTCCGAACCGGGTTAAAGTTGAAGTTCAACCACCCGAACCGGAGAAGAAGATCATAGACTCCAGGCTTCAAGAGCTTGAGAAGCAGCTTCTAGAAGATGAAGAAGAAGATGGAGTTGAAGCCGATGCGGTCTCTGTGATTACCACAAGCGAGTGGTCAGAGACCTTTCAGAATCTCATGGGTAATGGGTCGACCCAGAAACCCGCTTCTTCCTCACCAACTTCCTCAACGACGTCGTCTACCTCCTCTTCTTCTTCCGTTGCTTCACCTGCCACAGGGTGCTGGAAGCAAACCCTAATGGAAGCCGCATCTGCAATCGCTGAAGGGAAAAACGATGCTGCCACAGAGATCCTTACCCGGTTGGGTCAGGTTTCGAACCCGAATGCGAATTCGGATCAGAGGTTGAAGGATTGCATGGTTTCTGCACTGAAATCGAGGGTTAACCCGGGGGAGAATCCACCACCCGTGGCCGAGTTGTTCAGCAAGGAACACGCCGAGTCGACTCAGTTGCTGTTCGAGAACTCGCTCTGCTTCAAGGTGGGGTTCATGGCCGCAAACCTCGCCATCCTCGAAGCCGCATTTGAGGAGAAAACAAACGAAGACAACAACACCAGCAACAAGAAGAACAACAGGTTCTGTGTCGTGGATTTTGACATAGGGCAGGGGAAGCAGTATCTTAGCCTGCTCCACGCGCTCTCGGCGCGTGGGAGGACCCCGCGGGTGACGGTTAGGATCGCGGCGGTGGCGGAGAGCGGCGGAGACGAGAGGCTGAAGGCGGTGGGGGAGTTGCTTCAACGACAAGCGGAGATGTTAAGGATCGGGTTCGAGTTTAAGGTTGTAGTGGTGACTCAGCGACTCGCCGAGTTGACCCGCGAGTCTCTGGGTTGCGACCCGGACGAGCCACTCGCTGTGAACTTCGCTTTCAAATTGAACCGAATCCCGGACGAGAGCGTGTGCACGGAGAACCCGCGCGACGAGCTTTTGAGGCGCGTGAAGGCACTCGCGCCGCGCGTGGTCACGGTCGTGGAGCAGGAGATGAACGGCAACACGGCGCCGTTTCTTGCGCGCGTGACCGAGTCGTGCTCGTATTACGGCGCGCTGTTCGACTCGGTCGAGTCAGCGATGGGGAGGGAGAACCCGGAGCGAGTCAAGGTGGAGGAGGGACTGAGTCGAAGGCTGTGCAACTCGGTGGCGTGTGAAGGGAGGGACCGCGTGGAGCGCTGCGAGGTCTTCGGGAAATGGCGCGCGCGTATGGGAATGGCGGGGTTCCATCTGAAGCCACTGAGTCAAAGCGTTGCTGAGTCGATCAAATCGCGACTCGCCCAGGGTAACAACAACCAAGTCAACTCGGGACTCACCGTGAAAGAAGAGAACGGTGGGATTTGCTTTGGATGGATGGGGAGAACTCTCACCGTCGCATCTGCTTGGCGTTAA 2076 0.5578 MSSPGFPGAGASEFFAGAARSTTMNNPNAAAATATNSNHRFHPLYRNQQQLPALFLDPSSQIAPRQVQAPTPTTTLGKRTLAEFQQQNHLLNHNNNLNNNNLNHNHVLSNLLLRSVKPRTATFHSATNSPLSPLDFSIPELQNPSSSSSSHGFPTQRFGMPLLHQLRPNPINLPNHTTTYTNTTTTTNNNMGLPITNSVLQNPNFPYRSSNLGQPPNRVKVEVQPPEPEKKIIDSRLQELEKQLLEDEEEDGVEADAVSVITTSEWSETFQNLMGNGSTQKPASSSPTSSTTSSTSSSSSVASPATGCWKQTLMEAASAIAEGKNDAATEILTRLGQVSNPNANSDQRLKDCMVSALKSRVNPGENPPPVAELFSKEHAESTQLLFENSLCFKVGFMAANLAILEAAFEEKTNEDNNTSNKKNNRFCVVDFDIGQGKQYLSLLHALSARGRTPRVTVRIAAVAESGGDERLKAVGELLQRQAEMLRIGFEFKVVVVTQRLAELTRESLGCDPDEPLAVNFAFKLNRIPDESVCTENPRDELLRRVKALAPRVVTVVEQEMNGNTAPFLARVTESCSYYGALFDSVESAMGRENPERVKVEEGLSRRLCNSVACEGRDRVERCEVFGKWRARMGMAGFHLKPLSQSVAESIKSRLAQGNNNQVNSGLTVKEENGGICFGWMGRTLTVASAWR* 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3002 691 Coils Coil 230 250 - -
Dod02g3002 691 PANTHER SCARECROW-LIKE PROTEIN 8 70 690 IPR030013 -
Dod02g3002 691 MobiDBLite consensus disorder prediction 123 157 - -
Dod02g3002 691 MobiDBLite consensus disorder prediction 272 304 - -
Dod02g3002 691 ProSiteProfiles GRAS family profile. 300 691 IPR005202 -
Dod02g3002 691 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 70 690 IPR005202 -
Dod02g3002 691 Pfam GRAS domain family 310 691 IPR005202 -
Dod02g3002 691 MobiDBLite consensus disorder prediction 206 233 - -
Dod02g3002 691 MobiDBLite consensus disorder prediction 123 155 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g3002 Dod-Chr2 63550531 63552852 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3002 45 691 GRAS Transcription Factor Family AT5G52510 47.504 1.55e-156 465
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Dod02g3002 GRAS 3e-98 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3002 - - aip:107644872 845.114
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3002 02 63550531 63552852 Dod02g3002 02 63550531 63552852 ECH