Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g3000 ATGGATCCTAATGGTTCTGTGGAGGACAAGTGTGAAAATAGACTCTATATTGGTAACCTTGATCTCCGAATTACCGAAGCTGCTCTGCTTAAAATGTTTTCACCTTTTGGAAAGATCATTTCTGAGGACTTCTTGTGGCACACTCGTGGCCCAAAACGTGGGGAACCACGCGGTTTTGCTTTTATCCAATATAGCACAAAAGAGGAAGCAAAATTGGCCAAGGAGAAAATGCATGGGAGGTTAGCTTGTGGCCGTCCATTGGTTGTTCGCCTTGCTAGCGAGAAATATATGTTGGAAACAGCTGATAACTCTACAAAAGCAGCTGGTGAAGGGCACAAGATGCATCTGACTGGTGGTGGCATGGGACAGACAAGTCGTAGTGCCAAAATAGCTGCAATAAAGAACAAACTGAAATCCTTAGAGGAGGAGAGCTCAAGAACCAAGAAGCAGAAGCAAACTGAAGATATTTCTTGA 474 0.4388 MDPNGSVEDKCENRLYIGNLDLRITEAALLKMFSPFGKIISEDFLWHTRGPKRGEPRGFAFIQYSTKEEAKLAKEKMHGRLACGRPLVVRLASEKYMLETADNSTKAAGEGHKMHLTGGGMGQTSRSAKIAAIKNKLKSLEEESSRTKKQKQTEDIS* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g3000 157 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 94 IPR000504 GO:0003723
Dod02g3000 157 SUPERFAMILY RNA-binding domain, RBD 7 98 IPR035979 GO:0003676
Dod02g3000 157 PANTHER RNA-BINDING PROTEIN 18-RELATED 8 154 - -
Dod02g3000 157 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 8 154 - -
Dod02g3000 157 Coils Coil 130 150 - -
Dod02g3000 157 SMART rrm1_1 14 90 IPR000504 GO:0003723
Dod02g3000 157 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 87 IPR000504 GO:0003723
Dod02g3000 157 CDD RRM_RBM18 14 93 IPR039157 -
Dod02g3000 157 MobiDBLite consensus disorder prediction 135 157 - -
Dod02g3000 157 MobiDBLite consensus disorder prediction 134 157 - -
Dod02g3000 157 Gene3D - 10 105 IPR012677 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g3000 15 116 Eukaryotic Initiation Factors Gene Family AT1G34140 34.314 1.15e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g3000 K24527 - gmx:100804800 273.478
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g3000 02 63535171 63537774 Dod02g3000 02 63535171 63537774 ECH