Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2970 ATGGCTTCTGATCTCGAAGCGAAAGCGAAAGAGGCGTTCGTTGAAGAACACTACGAGCTCGCAGTGGGGCTTCTCACTCAGGCCATTGATCTCGACCCCAACCGAGCAGAGCTCTATGCCGACCGTGCTCAAGCCAACATCAAACTTTGCAGCTTCACTGAGGCTGTTGCTGATGCAAGCAAGGCAATTGAGCTGAATCCTTCTCTTTCAAAAGCATATTTGCGCAAAGGTATTGCATGCATGAAGCTTGAGGAGTATCAAACTGCTAAGGCTGCTTTAAAGGCTGGTGCTTCCTTGGCTCCAGGGGAATCAAGATTTGCTAATTTAATCAAAGAATGTGATGAGCTCATTGCAGAAGAATCTTATACAATACCAATACAGGAAAAGACCGCAACACACAGCGTATCTGCAAAAGATGTTCAACCAGAGACTGATCTTCCAGAGCAGCCAACAGTTGCAGTGGCTAAACCTAAATTTAGGCATGAATTCTACCAGAAATCTGATGAGGTGGTTGTAACCGTATTTGCAAAGGGCATTCCAAGGGAAAGCATTGATATCGAGTTTGGGGAACAAATAGTAAGTGTCAGTATTAATGTCCCTGGAGAAGATCCGTATGTTTTTCAACGTCGCTTATTTGGAAAGATCATACCTTCAAGATGCCGGTATGAAGTCTTGGCCACCAAAATTGAAATACACCTGGCAAAAGCAGAATCCATTCACTGGACATCACTCGAATTCTCCGGAGTTGCAGCTCCACAAAAGGTTAATGTTTCCACAGGTAACTTTAGACTTATCTAG 798 0.4424 MASDLEAKAKEAFVEEHYELAVGLLTQAIDLDPNRAELYADRAQANIKLCSFTEAVADASKAIELNPSLSKAYLRKGIACMKLEEYQTAKAALKAGASLAPGESRFANLIKECDELIAEESYTIPIQEKTATHSVSAKDVQPETDLPEQPTVAVAKPKFRHEFYQKSDEVVVTVFAKGIPRESIDIEFGEQIVSVSINVPGEDPYVFQRRLFGKIIPSRCRYEVLATKIEIHLAKAESIHWTSLEFSGVAAPQKVNVSTGNFRLI* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2970 265 Gene3D Tetratricopeptide repeat domain 1 146 IPR011990 GO:0005515
Dod02g2970 265 SUPERFAMILY TPR-like 3 113 IPR011990 GO:0005515
Dod02g2970 265 ProSiteProfiles TPR repeat profile. 36 69 IPR019734 GO:0005515
Dod02g2970 265 Pfam CS domain 160 235 IPR007052 -
Dod02g2970 265 ProSiteProfiles CS domain profile. 156 245 IPR007052 -
Dod02g2970 265 PANTHER PROTEIN SGT1 HOMOLOG 1 259 IPR044563 GO:0051087
Dod02g2970 265 SUPERFAMILY HSP20-like chaperones 147 250 IPR008978 -
Dod02g2970 265 CDD p23_CS_SGT1_like 162 245 - -
Dod02g2970 265 Pfam Tetratricopeptide repeat 36 68 IPR019734 GO:0005515
Dod02g2970 265 Pfam Tetratricopeptide repeat 71 101 IPR019734 GO:0005515
Dod02g2970 265 PANTHER PROTEIN SGT1 HOMOLOG ISOFORM X1 1 259 - -
Dod02g2970 265 Gene3D - 157 247 IPR008978 -
Dod02g2970 265 SMART tpr_5 2 35 IPR019734 GO:0005515
Dod02g2970 265 SMART tpr_5 70 103 IPR019734 GO:0005515
Dod02g2970 265 SMART tpr_5 36 69 IPR019734 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2970 Dod-Chr2 63270007 63275479 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2970 1 122 U-box Gene Family AT3G07370 25.410 3.50e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2970 K12795 - gmx:100780174 382.104
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2970 02 63270007 63275479 Dod06g0844 06 10495923 10499473 ECH
Dod02g2970 02 63270007 63275479 Dod02g2970 02 63270007 63275479 ECH