Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2961 ATGGAAGAAGATGATGATTATGAGGAGTATGTGCCTGTGGCCAAGCGTCGGGCAATGGAAGCTCAGAAGATTCTCCAACGCAAGGGGAAGGCCTCTATTGCAACAGATGCTGATTTGGAGAAACTAAGAGTCACTGAGACTAAGCCCAGTCTTTTAGTTAAGGCATCACAGTTGAAACGAGAACAGCCTGAGATTAGTGCAACAGAGCAGATTGTTCAACAGGAGAAGGAGATGATTGAGAACTTGTCAGATAGAAAAACCCTTATGTCTGTTCGTGAATTAGCTAAGGGGATCACATATACTGAACCATTGCTTACGGGCTGGAAGCCGCCTTTGCATGTCAGAAGGATGTCTAAAAAGGAGTGTGATTTAATTCGAAAGCAGTGGCATATAATAGTTGATGGTGAAGATATCCCACCCCCAATTAAGAATTTTAAGGATATGAGATTTCCAGAGCCAGTTTTGAAGAAACTGAAAGCTAAGGGGATTGTGCAACCAACACCTATTCAGGTGCAAGGCCTTCCTGTTATCCTATCTGGGCGGGATATGATTGGGATTGCTTTCACAGGCTCAGGAAAAACCCTGGTCTTTGTGCTGCCAATGATCATGGTGGCAATGCAGGAGGAAATTATGATGCCTATTGTTCCTGGTGAAGGTCCATTTGGTTTGATTATTTGTCCATCTAGGGAACTGGCTAGGCAGACTTATGAAGTGGTTGAACAGTTCTTAATACCATTGAAGGAAGCTGGATATCCAGAGCTCAGGCCTTTGCTTTGTATTGGTGGAGTGGATATGAGATCACAGCTTGAGATTGTGAAGAAGGGTGTTCATATCGTTGTTGCCACTCCTGGCAGATTGAAGGATATGTTGGCCAAGAAGAAAATGAATCTTGATAACTGCAGGTATTTAACATTAGATGAGGCTGATCGACTGGTTGATTTAGGATTTGAAGACGACATAAGAGAAGTTTTTGATCACTTCAAAGCTCAAAGGCAGACTCTGTTATTTTCCGCCACTATGCCAACCAAAATCCAGAACTTTGCTAGAAGTGCTTTGGTGAAACCTATAATAGTCAACGTGGGGCGTGCAGGAGCAGCGAATCTTGATGTAATCCAAGAGGTAGAGTATGTTAAGCAAGAGGCGAAAATAGTTTATCTCCTTGAATGCCTGCAAAAAACCCCACCTCCTGTTCTAATATTCTGTGAGAATAAGGCTGACGTTGATGACATTCATGAATATCTTCTCTTGAAAGGAGTTGAAGCAGTGGCTATTCATGGAGGCAAGGATCAGGAAGAGAGAGAGTATGCCATTGCAGCTTTTAAGGCTGGGAAGAAAGATGTGTTGGTTGCAACCGATGTTGCGTCCAAAGTTGATTTGGGCATCTTTCATTTGGAAGATTCCCTCTATCAGTCGGTGAGAATTCATATAAGCTTGAGCTACTATCGTAAATGA 1452 0.4284 MEEDDDYEEYVPVAKRRAMEAQKILQRKGKASIATDADLEKLRVTETKPSLLVKASQLKREQPEISATEQIVQQEKEMIENLSDRKTLMSVRELAKGITYTEPLLTGWKPPLHVRRMSKKECDLIRKQWHIIVDGEDIPPPIKNFKDMRFPEPVLKKLKAKGIVQPTPIQVQGLPVILSGRDMIGIAFTGSGKTLVFVLPMIMVAMQEEIMMPIVPGEGPFGLIICPSRELARQTYEVVEQFLIPLKEAGYPELRPLLCIGGVDMRSQLEIVKKGVHIVVATPGRLKDMLAKKKMNLDNCRYLTLDEADRLVDLGFEDDIREVFDHFKAQRQTLLFSATMPTKIQNFARSALVKPIIVNVGRAGAANLDVIQEVEYVKQEAKIVYLLECLQKTPPPVLIFCENKADVDDIHEYLLLKGVEAVAIHGGKDQEEREYAIAAFKAGKKDVLVATDVASKVDLGIFHLEDSLYQSVRIHISLSYYRK* 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2961 483 Coils Coil 65 85 - -
Dod02g2961 483 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 174 358 IPR014001 -
Dod02g2961 483 SMART ultradead3 162 373 IPR014001 -
Dod02g2961 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 369 455 IPR027417 -
Dod02g2961 483 Pfam DEAD/DEAH box helicase 167 346 IPR011545 GO:0003676|GO:0005524
Dod02g2961 483 CDD SF2_C_DEAD 370 455 - -
Dod02g2961 483 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 143 171 IPR014014 GO:0003724
Dod02g2961 483 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 8 456 - -
Dod02g2961 483 PANTHER BNAA06G38640D PROTEIN 8 456 - -
Dod02g2961 483 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 369 483 IPR001650 -
Dod02g2961 483 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 126 360 IPR027417 -
Dod02g2961 483 Gene3D - 111 362 IPR027417 -
Dod02g2961 483 Gene3D - 368 460 IPR027417 -
Dod02g2961 483 CDD DEADc_DDX41 154 359 IPR044113 GO:0000398|GO:0003724|GO:0005524
Dod02g2961 483 Pfam Helicase conserved C-terminal domain 382 455 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2961 Dod-Chr2 62969971 62982992 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2961 131 456 Eukaryotic Initiation Factors Gene Family AT3G19760 29.305 3.15e-38 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2961 K13116 - gmx:100814127 865.529