Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2935 ATGGCAGATCTTGCTAGCCTAGGGAATGCCGACCGTGACATCCACCAGGCATTGCACGCTTTGAAAAAGGGTTCTCAACTACTTAAATATGGTCGTAAGGGAAAGCCCAAGTTTTGTCCATTTCGACTTTCTTCTGATGAATCATCGTTAATCTGGATTTCAAGTAATCGAGAAAGAAGTTTGAAACTATCTTCTGTCTCAAGAATTATTCCTGGACAAAGAACTGCTGTTTTCCAACGTTACCCACGTCCTGAGAAGGACTATTTGTCTTTTTCACTAATTTATAATAACGGAAAGCGATCCCTTGATTTGATTTGCAAAGATAAAGTTGAGGCAGAAGTGTGGATTGCTGGTCTTAAAGCACTGATAACATCTGGTCAAGGTGGTCGGTCCAAAATTGATGGATGGAGTGACGGGGGACTAAATTTTGATGATAGCAGAGACTTAACATCAAGTAGTCCAAGTGAAAGTTCAGCTAGTGCTTCACGAGACATTAGTTCACCTGACGTCTCTGTGAGTCTTCCAAATACTTCACCAAAGTCGTTTCGACCTGACAATACCTTGAATTCTGAAAAGTCACATGCACCATCAGACCCAAAAAATATGCAAGTAAAAGGATCTGGTTCAGATGTTGTTCGTGTTAGTGTTTCAAGTGCCCCCAGCACATCCAGTCATGGTTCTGCACCAGATGACTATGAAGCTCTAGGGGATGTATACATATGGGGGGAGGTTATCTGTGAAAACGTTGTGAAAGTTGGTGCTGATAAAAGTGTCAATTATTTCAGCCCGAGGGCAGATGTGCTTCTTCCAAGACCACTTGAATCCAATGTTGTTTTAGATGTAAATCATATAGCATGTGGTGTTAGACATGCATCTCTAGTCACCAGGCAAGGTGAAGTTTTTACATGGGGTGAAGAATCAGGAGGACGCCTTGGCCATGGTGTTGGGAAGAATGTGGTTCAACCTTGTCTAGTTGAAGCATTGGCTTCTACAACTATTGATTTTGTTGCCTGTGGAGAGTTCCATTCTTGTGCTGTTACAATGGGCGGGGAACTATATACATGGGGTGATGGAACTCATAATGCTGGGCTTCTTGGTCATGGCACTGATGTTAGTCATTGGGTACCAAAGAGAATTGCAGGTCCATTAGAGGGACTTCAAGTTGCTTTCGTGGCTTGTGGTCCATGGCACACAGCCTTGATAACTTCAACTGGGCAGCTTTTTACATTTGGTGATGGAACATTTGGGGTCCTGGGCCATGGAGATAGGGAAAATGTTTCCTATCCTAGAGAAGTAGATTCCTTATCAGGGTTGAGGACGATAGCTGTTGCATGTGGAGTGTGGCATACTGCAGCTGTTGTAGAGGTTATTGTGACACAATCCAGTGCAAGTGTATCATCCGGTAAGTTGTTTACTTGGGGTGATGGAGACAAAAATCGCCTTGGACATGGGGATAAGGATTCTCGGCTTAAGCCAACTTGTGTTTCTGCCCTCATTGATTACAATTTTCATAAAATTGCTTGTGGGCACAGTTTGACAGTAGGCCTGACTACATCTGGACGTATTTTTACGATGGGAAGTACTGTTTATGGTCAGCTTGGGAATATCCAGTCTGATGGGAAGGTTCCCTGCTTGGTTGAAGACAAGATTGCCGGGGAATCCATTGAAGAAATTGCATGTGGTGCATATCATGTTGCTGCTTTAACATCCAAAAATGAAGTTTATACTTGGGGGAAGGGTGCAAATGGGAGATTGGGTCATGGGGATGTTGAAGATCGAAAAGTACCAACATTGGTCGAAGCATTGAAGGATAGACATGTGAAATATATAGCATGTGGTTCAAATTACTCTGCGGCTATATGCCTTCATAAGTGGGTATCTGGTGCTGAGCAGTCTCAGTGCTCTGCTTGTAGACAGGCATTTGGATTCACTAGAAAGAGGCACAATTGTTACAACTGTGGACTTGTACATTGCCATTCATGCAGTTCAAGGAAAGCATTAAGAGCAGCTCTTGCTCCTAATCCTGGAAAGCCTTATCGTGTCTGTGATTCTTGTTATGCAAAACTGAACAAGGTTGCAGAAGCTAGCAACAGTAATCGGAGGAATACTTTGCCTCGTTTGTCAGGTGAAAACAAGGACAGATTGGAAAAGTCTGAGCTAAAATTGTCCAAGGCAGTAATTCCGTCTAATATGGATTTGATAAAGCAGCTAGATAGTAAGGCAGCCAAACAAGGAAAGAAAGCTGATACGTTTTCACTGGTTCGCACGTCACAAGCACCTTCTTTGCTACAGTTGAAAGATGTTGTCTTGTCAACTGCTGTTGATCTGAGACGAACAGCTCCAAGACCGGTGATCGCACCATCTGGAGTAAGTTCCAGGTCTGTGTCCCCTTTTTCTAGAAGACCGAGTCCCCCTCGTTCAGCAACACCTATTCCAACAACATCGGGACTTTCCTTCTCCAAAGGCATTGCTGATAGTTTGAAGAAAACAAATGAACTTTTAAATCAAGAAGTGCAGAAGTTACGTGCTCAGGTTGAGAGCCTGAAACAGAGATGTGAACTGCAAGAGTTAGAGCTTCAAAGCTCATCCAAAAAGACTCAAGAAGCTATGGCACTGGCGGCTGAGGAATCTACTAAATGTAAAGCCGCAAAAGAAGTTATAAAGTCACTCACAGCACAGCTCAAAGATCTAGCTGAGAAGCTCCCACGAGGAGTTTACGATACAGGGGACATTAGACCGGCTTACCTACCAAATGGTCTTGAGCCAAATGGCGTCCACCTTCCAGACTCAAATGGAGAGCACCACTCAAGGGCGGAGTCAATCAGCGGCTCTAGTTTGGCCTCCACAGGACTTGAATCCTCTCTACTGAATAGAAATGTGGAGAATTCGCCAGGAACCTATGAGACTAATCTTCACCAGCTGAACCGGGCCCATGCTACCTCTAATGGGACAGACCGTTATCCAGATGTTAAATTTCCAAATGGTGGCGATGTGACTCAGGCAAGCAGTGTTAGCATGTCGGACACTGTTGATGGTAGGGATTCTGGGAACTTCCAGGATGATGAGGGTGGTTTGAGATCAAGAAATGCAGGACCGGCTGCTAATAGTAACCAAATTGAGGCAGAATGGATTGAACAATATGAACCTGGTGTCTATATAACACTTGTGGCTCTGCGCGATGGAACACGAGATTTGAAGCGAGTGCGTTTCAGCCGGAGAAGATTCGGAGAGCACCAAGCGGAGACTTGGTGGTCAGAGAACCGGGATAGAGTATACGAAAGGTACAATGTTCGCAGCGCAGACAAGCCTTCCAACCAGGTGGCGCGTAGGGCAGAAGGTGCTGGTTCTCCTATTTCCCAAACTTAG 3366 0.4459 MADLASLGNADRDIHQALHALKKGSQLLKYGRKGKPKFCPFRLSSDESSLIWISSNRERSLKLSSVSRIIPGQRTAVFQRYPRPEKDYLSFSLIYNNGKRSLDLICKDKVEAEVWIAGLKALITSGQGGRSKIDGWSDGGLNFDDSRDLTSSSPSESSASASRDISSPDVSVSLPNTSPKSFRPDNTLNSEKSHAPSDPKNMQVKGSGSDVVRVSVSSAPSTSSHGSAPDDYEALGDVYIWGEVICENVVKVGADKSVNYFSPRADVLLPRPLESNVVLDVNHIACGVRHASLVTRQGEVFTWGEESGGRLGHGVGKNVVQPCLVEALASTTIDFVACGEFHSCAVTMGGELYTWGDGTHNAGLLGHGTDVSHWVPKRIAGPLEGLQVAFVACGPWHTALITSTGQLFTFGDGTFGVLGHGDRENVSYPREVDSLSGLRTIAVACGVWHTAAVVEVIVTQSSASVSSGKLFTWGDGDKNRLGHGDKDSRLKPTCVSALIDYNFHKIACGHSLTVGLTTSGRIFTMGSTVYGQLGNIQSDGKVPCLVEDKIAGESIEEIACGAYHVAALTSKNEVYTWGKGANGRLGHGDVEDRKVPTLVEALKDRHVKYIACGSNYSAAICLHKWVSGAEQSQCSACRQAFGFTRKRHNCYNCGLVHCHSCSSRKALRAALAPNPGKPYRVCDSCYAKLNKVAEASNSNRRNTLPRLSGENKDRLEKSELKLSKAVIPSNMDLIKQLDSKAAKQGKKADTFSLVRTSQAPSLLQLKDVVLSTAVDLRRTAPRPVIAPSGVSSRSVSPFSRRPSPPRSATPIPTTSGLSFSKGIADSLKKTNELLNQEVQKLRAQVESLKQRCELQELELQSSSKKTQEAMALAAEESTKCKAAKEVIKSLTAQLKDLAEKLPRGVYDTGDIRPAYLPNGLEPNGVHLPDSNGEHHSRAESISGSSLASTGLESSLLNRNVENSPGTYETNLHQLNRAHATSNGTDRYPDVKFPNGGDVTQASSVSMSDTVDGRDSGNFQDDEGGLRSRNAGPAANSNQIEAEWIEQYEPGVYITLVALRDGTRDLKRVRFSRRRFGEHQAETWWSENRDRVYERYNVRSADKPSNQVARRAEGAGSPISQT* 1122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2935 1121 PRINTS Chromosome condensation regulator RCC1 signature 350 366 IPR000408 -
Dod02g2935 1121 PRINTS Chromosome condensation regulator RCC1 signature 391 407 IPR000408 -
Dod02g2935 1121 PRINTS Chromosome condensation regulator RCC1 signature 407 421 IPR000408 -
Dod02g2935 1121 PRINTS Chromosome condensation regulator RCC1 signature 567 588 IPR000408 -
Dod02g2935 1121 PRINTS Chromosome condensation regulator RCC1 signature 300 316 IPR000408 -
Dod02g2935 1121 PRINTS Chromosome condensation regulator RCC1 signature 509 527 IPR000408 -
Dod02g2935 1121 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 628 690 IPR017455 -
Dod02g2935 1121 ProSiteProfiles BRX domain profile. 1041 1096 IPR013591 -
Dod02g2935 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 405 453 IPR000408 -
Dod02g2935 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 350 401 IPR000408 -
Dod02g2935 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 519 568 IPR000408 -
Dod02g2935 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 573 620 IPR000408 -
Dod02g2935 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 298 346 IPR000408 -
Dod02g2935 1121 Pfam Regulator of chromosome condensation (RCC1) repeat 467 514 IPR000408 -
Dod02g2935 1121 MobiDBLite consensus disorder prediction 996 1013 - -
Dod02g2935 1121 CDD FYVE_like_SF 633 686 - -
Dod02g2935 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 350 404 IPR000408 -
Dod02g2935 1121 Coils Coil 880 900 - -
Dod02g2935 1121 CDD PH_PLC_plant-like 12 124 - -
Dod02g2935 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 391 401 IPR000408 -
Dod02g2935 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 405 456 IPR000408 -
Dod02g2935 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 468 519 IPR000408 -
Dod02g2935 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 572 623 IPR000408 -
Dod02g2935 1121 MobiDBLite consensus disorder prediction 979 1034 - -
Dod02g2935 1121 Pfam Transcription factor regulating root and shoot growth via Pin3 1040 1095 IPR013591 -
Dod02g2935 1121 PANTHER REGULATOR OF CHROMOSOME CONDENSATION (RCC1) FAMILY WITH FYVE ZINC FINGER DOMAIN-CONTAINING PROTEIN 13 1102 - -
Dod02g2935 1121 MobiDBLite consensus disorder prediction 144 229 - -
Dod02g2935 1121 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 13 1102 - -
Dod02g2935 1121 Gene3D - 13 129 IPR011993 -
Dod02g2935 1121 SUPERFAMILY FYVE/PHD zinc finger 624 701 IPR011011 -
Dod02g2935 1121 Gene3D - 183 461 IPR009091 -
Dod02g2935 1121 Gene3D - 462 637 IPR009091 -
Dod02g2935 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 298 349 IPR000408 -
Dod02g2935 1121 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 638 697 IPR013083 -
Dod02g2935 1121 SUPERFAMILY RCC1/BLIP-II 236 625 IPR009091 -
Dod02g2935 1121 MobiDBLite consensus disorder prediction 1100 1121 - -
Dod02g2935 1121 MobiDBLite consensus disorder prediction 783 817 - -
Dod02g2935 1121 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 520 571 IPR000408 -
Dod02g2935 1121 SUPERFAMILY PH domain-like 13 123 - -
Dod02g2935 1121 Pfam Transcription factor BRX N-terminal domain 875 908 IPR027988 -
Dod02g2935 1121 MobiDBLite consensus disorder prediction 144 228 - -
Dod02g2935 1121 Coils Coil 824 865 - -
Dod02g2935 1121 MobiDBLite consensus disorder prediction 917 946 - -
Dod02g2935 1121 Pfam FYVE zinc finger 624 690 IPR000306 GO:0046872
Dod02g2935 1121 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 443 453 IPR000408 -
Dod02g2935 1121 Pfam Pleckstrin homology domain 16 123 IPR001849 -
Dod02g2935 1121 SMART fyve_4 622 691 IPR000306 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2935 Dod-Chr2 61907966 61915662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2935 1042 1112 Major Intrinsic Protein MIP AT1G31880 46.479 9.09e-15 75.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2935 - - adu:107490830 1929.07
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2935 02 61907966 61915662 Dod06g0870 06 10952891 10961456 PCT