Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2934 ATGGCCAGGGTAAGGGAGAAGCTATACGTCACCGTTCCGAGCCTTTTCCGGTGCCCAATTTCAATGGACGTGATGAGGTCTCCCGTAAGCCTGTGCACCGGCGTTACATACGATCGCTCCAGCATCCAGCGCTGGCTCGACTCAGGTCACGACACGTGTCCCACCACCATGCAAGTCCTCCCTTCCAAGGACTTCATCCCGAACCTCACCCTCCACCGCCTCATCCGCCTCTGGCTTCTCTCCACCGCCACCGAACCATCATCACCTGAATCTTCACTATCCGGCGACCGCCTCCGCGCTCTCCTCGCTGGAATCCAAACCGGCGCCGCGGATCTTGCCGCTTCTTCCCTCTCCGAGATCGCCGAATTCGCCAGATTATCCGGCGAAAACCGCCGTCTCCTCGCGAGCTTCTGCGGCTTCGATTCCGCCATCTCTCGCGCCCTCGCCGGGAGCCGGTCGCGGATCGAAGCTTCCGAAAACGCCATCGCAATTCTGGATTTGGTTTTCAGGGAGAGCGGAAATTCCGGCACGGGCGCCGGAGAGAAAATCCGGCGGTCGATCCTCGACGCTCGCGAGGGTTGCTTCGCCTCGATCGTATTCGTTCTCGAGAACGGATCTGCGAAATTGAAGGTCGAATCGGTCAGTGTGTTGGAGTTTCTCGCCGGAGATTTTCAATCGAAGCGGTGGATCGCGGAAACGCGAGGATTGTTGTCCCTGCTAACGAAGCTTCTCAATGACGGAAGCGACGAGCTCAACGACGCCGTTTTGTCGCTTTTGGCAGCTGTTTCGGTGACTCAGTCAGCGAAGGCCGAGCTCGTCCGTTGCGGAATCGTCGAGGTTGTTTCGAAGAGGCTGCGGAGCGCCGAAAGCGGCGGTGCGGCGGTGGAGAAGTGGCTCAGGGTGCTGGCGGTGGCTGCGAAGTGCGCGGAGGGGAGGGCGGCGATGGCCGAAGATCCGTCGTGCGCGGCGGTGGTGACGGAGAGGCTGGCGAAGGCGGGGAAGTCGGCGGCGGAGGACGCGGTTGCGGTGCTGTGGAGCCTGTGCTGCCTGTGCGGTAACGAGAGGGTGAGGGATGAGGTGGCGAAGCGAAACGGCGTCGCAGTGGTGCTTTTGGTGATGCAGAGAGGGTGCGACGAGCACGTGAGGAGCATGTGCGTGGATTTGATTAAGGTTATGCGGAAGAAGAACGGGTTGCCCTTAGCACTGGGTAGCTATGACACCAAAACTACTCATATCAAGCCTTGCTAA 1248 0.601 MARVREKLYVTVPSLFRCPISMDVMRSPVSLCTGVTYDRSSIQRWLDSGHDTCPTTMQVLPSKDFIPNLTLHRLIRLWLLSTATEPSSPESSLSGDRLRALLAGIQTGAADLAASSLSEIAEFARLSGENRRLLASFCGFDSAISRALAGSRSRIEASENAIAILDLVFRESGNSGTGAGEKIRRSILDAREGCFASIVFVLENGSAKLKVESVSVLEFLAGDFQSKRWIAETRGLLSLLTKLLNDGSDELNDAVLSLLAAVSVTQSAKAELVRCGIVEVVSKRLRSAESGGAAVEKWLRVLAVAAKCAEGRAAMAEDPSCAAVVTERLAKAGKSAAEDAVAVLWSLCCLCGNERVRDEVAKRNGVAVVLLVMQRGCDEHVRSMCVDLIKVMRKKNGLPLALGSYDTKTTHIKPC* 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2934 415 SUPERFAMILY ARM repeat 189 392 IPR016024 -
Dod02g2934 415 SUPERFAMILY RING/U-box 8 81 - -
Dod02g2934 415 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 3 91 IPR013083 -
Dod02g2934 415 ProSiteProfiles U-box domain profile. 11 85 IPR003613 GO:0004842|GO:0016567
Dod02g2934 415 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 6 415 - -
Dod02g2934 415 CDD RING-Ubox_PUB 16 58 IPR045210 -
Dod02g2934 415 SMART Ubox_2 15 78 IPR003613 GO:0004842|GO:0016567
Dod02g2934 415 Pfam U-box domain 12 81 IPR003613 GO:0004842|GO:0016567
Dod02g2934 415 PANTHER WDSAM1 PROTEIN 6 415 IPR045185 GO:0061630
Dod02g2934 415 Gene3D - 98 412 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2934 Dod-Chr2 61891626 61893501 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2934 6 414 U-box Gene Family AT5G09800 38.038 1.01e-79 250
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2934 - - adu:107491069 606.29