Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2915 ATGTCCTTCCGCAGTATTGTTCGTGATGTAAGAGATGGGTTTGGAAGCTTATCAAGACGGAGTTTTGAGATAAGGCTTCATGGCCATCACAGGGGCAAGTCACATAGTTTGGTCCATGGGTCGCAGGAACAACTGCCAGTGATACAGAACAGTCAGTGGGCTAGCCTTCCGCCTGAACTTCTTCGTGATGTTATTAAACGATTGGAAGCAGATGAGAGTGCATGGCCTGGTCGTAAACATGTGGTTGCATGTGCCGGTGTTTGCAAGTCCTGGAGAGAAATGTGCAAAGAAATTGTTAGCAGTCCTGAGTTCAGTGGGAAGATTACTTTCCCTGTGTCCCTGAAGCAGCCTGGTTCTAGGGATGGAACCATCCAATGTTTCATCAAGAGAGACAAATCCAATCTGACTTACCACCTATTCCTTTGTCTTAGTCCTGCATTGCTCGTTGAAAATGGAAAGTTTCTTCTTTCTGCAAAACGGACCAGAAGGACAACGTGCACGGAGTATATTATATCAATGAATGTGGATAACATATCAAGATCTAGTAGCACTTACATTGGAAAACTGAGGTCAAATTTTCTTGGCACCAAATTTATAATTTATGATACGCAGCCTCCCTGTAGCACTGCACAGCTGTCTCCACCAGGCCGAAGCCGTAGGTTTTATTCAAAAAAAGTTTCTCCAAAGGTTCCTAGTGGCAGCTATAATATTGCTCGGATCACCTATGAGTTGAATGTCCTTGGTACTCGGGGCCCACGCAGGATGAACTGCACAATGTACACAATCCCTACATCAGCCCTCGAGCCGGGTGGCATTGTCCCAGGCAAACCAGAGCTCCTTCCCCGCGCCCTTGAGGATTCCTTCAGGAGCATCTCCTTCTCAAAATCAATTGACAACTCATCTGAGTTTAGCAGCACCCGGTTTTCCGACATACTTGGGGCCGGCAACGAAGAGGAGGGAAAAGACAGACCTCTAGTCCTCAAGAACAAGTCACCAAGATGGCATGAGCAGCTGCAGTGTTGGTGCCTCAACTTTAGGGGAAGGGTGACTGTTGCCTCTGTCAAGAACTTTCAGCTGATTGCCGCAACGCAACCTGCAGCCGGCGCTCCTACACCATCATCGCAGCCAGCACAATCCGACCATGACAAGATTATTCTTCAGTTTGGCAAAGTGGGCAAGGATATGTTCACAATGGACTATAGATACCCCCTATCAGCATTTCAAGCTTTTGCAATTTGCTTGACTAGCTTTGACACAAAACTGGCTTGTGAATAG 1275 0.4698 MSFRSIVRDVRDGFGSLSRRSFEIRLHGHHRGKSHSLVHGSQEQLPVIQNSQWASLPPELLRDVIKRLEADESAWPGRKHVVACAGVCKSWREMCKEIVSSPEFSGKITFPVSLKQPGSRDGTIQCFIKRDKSNLTYHLFLCLSPALLVENGKFLLSAKRTRRTTCTEYIISMNVDNISRSSSTYIGKLRSNFLGTKFIIYDTQPPCSTAQLSPPGRSRRFYSKKVSPKVPSGSYNIARITYELNVLGTRGPRRMNCTMYTIPTSALEPGGIVPGKPELLPRALEDSFRSISFSKSIDNSSEFSSTRFSDILGAGNEEEGKDRPLVLKNKSPRWHEQLQCWCLNFRGRVTVASVKNFQLIAATQPAAGAPTPSSQPAQSDHDKIILQFGKVGKDMFTMDYRYPLSAFQAFAICLTSFDTKLACE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2915 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 1 424 - -
Dod02g2915 424 Pfam Tub family 114 419 IPR000007 -
Dod02g2915 424 SUPERFAMILY Tubby C-terminal domain-like 102 424 IPR025659 -
Dod02g2915 424 Pfam F-box domain 53 100 IPR001810 GO:0005515
Dod02g2915 424 Gene3D - 48 101 - -
Dod02g2915 424 Gene3D Tubby Protein; Chain A 110 424 IPR025659 -
Dod02g2915 424 SUPERFAMILY F-box domain 46 97 IPR036047 GO:0005515
Dod02g2915 424 ProSitePatterns Tub family signature 1. 345 358 IPR018066 -
Dod02g2915 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Dod02g2915 424 PANTHER TUBBY-RELATED 1 424 - -
Dod02g2915 424 PRINTS Tubby superfamily signature 327 344 IPR000007 -
Dod02g2915 424 PRINTS Tubby superfamily signature 169 185 IPR000007 -
Dod02g2915 424 PRINTS Tubby superfamily signature 234 261 IPR000007 -
Dod02g2915 424 PRINTS Tubby superfamily signature 345 361 IPR000007 -
Dod02g2915 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Dod02g2915 424 PRINTS Tubby superfamily signature 185 209 IPR000007 -
Dod02g2915 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2915 Dod-Chr2 61512651 61517011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2915 1 424 TUB Transcription Factor Family AT1G76900 68.845 0.0 596
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Dod02g2915 Tub 2.6e-114 CL0395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2915 K19600 - zju:107421669 726.857
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2915 02 61512651 61517011 Dod06g0890 06 11350103 11353909 PCT