Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2890 ATGTGCTTGCTAACAACGGTGGCGCATCCAAGGGGTTCAGGTGAGTTCATCAGGTTCATGGCGGCGCAGCGCGGCGGCGGTGACGGCGATGATGAGGAACACGGTGGCGGTGGTGGTGATGGTGGAAGCTCATCCGGGCCATATCAGCCACTAGGAGGGAACCAAGGTGAGGTGGCAATGCAAGGTTCATCAGGGCAGAGAAGTGCTAGAGAGTTCACAGAGATGGTTTCGGCTCTGACTCATGTTGTTTCATCGGGATCTTCTGGCCTTAGCGGCACCGAATGGTTGTTCCCTTCTATGATGTCAGGTTTTGGACACGTGTCCTCTTTGTCCTCATTCACCACTTCTTCTTGTTCTTCTGCGACTTCTGGACCTGCCTTGGGTCCTGGCTCTCTCTCTGGCTCCTCATCATGGGTTGGCCAAAAGAGAGGGCGTGAGGAACAACAAATGAGTGGTTCTTCTCAATCTCATCGTCATCATTTGGTTCAACAAGCTGCTCCTAGAATGTTTAGAACTATTGGTGACTTCAAGGTGCCACCTTCTCAAGGAGAGTCTTCATCAGTGACAGAAGAATCTTCCGCCAGCACAGCCGCCGCTGCATCGGGAGCTGCCGCAGCCGCAACTCCGGCGACACCGTCAAGCGAAACTGCAGCATCATATGAAGAAACCGGAGAGAGAAGAAGAAGGTACAGGGGAGTGAGACAGAGGCCATGGGGAAAATGGGCAGCTGAAATCCGGGATCCACACAAAGCAGCAAGGGTATGGCTTGGAACATTCGACACAGCAGAAGCAGCAGCAAGAGCATACGATGAAGCTGCATTGAGATTCAGGGGGAACAGAGCAAAGCTTAATTTTCCAGAGAATGTAAGAGCAGTGACACCACCAATCCAAACTTTTCCTGCCACCGCCACCCAATTCCGCCACCCGACGGTGGCTGCCGCCGCCACACCTCAGCCGTACCAGCCACCGTTCATGCAGCATCAGCAGCAGCAGCCACAACTTCAGGGGTCCTCTGATTTGATCAGAGATTATTTAGAATATTCTCTGCTTTTGCAGAGTTCTGGTGATTTTCATCAACAGCAGCTCCAACAACAGCAGCAGCAGCAGCAGCAACAACCTGCGAGTTCGTTGCAACAGTGGTACTATAATTCACAATTGGCGGCACTTCAATCGTCGTCTTCTTCTTCTTCTTCTTCGTTGTTGTTCTCACCACTGCCATCATCTTTGTCTTCTTCTTCTGCATCGTTCTCTGTTTCACCTTCTGGTAGTAGTCATCAACCTCCCCCTGTTTCGCTTCCCCTGTTTCCTAGTCAGCAAATGGGGTTTTTCCAGCCGCCGGAAAACCGCCCTGACGGCGGCTCCGGCATCGGTGGGTTGGATTTTCCGCCGTCAACTTGGTCAGATACCAGTGGCTATCCACCACCACCTGGTTGA 1434 0.5244 MCLLTTVAHPRGSGEFIRFMAAQRGGGDGDDEEHGGGGGDGGSSSGPYQPLGGNQGEVAMQGSSGQRSAREFTEMVSALTHVVSSGSSGLSGTEWLFPSMMSGFGHVSSLSSFTTSSCSSATSGPALGPGSLSGSSSWVGQKRGREEQQMSGSSQSHRHHLVQQAAPRMFRTIGDFKVPPSQGESSSVTEESSASTAAAASGAAAAATPATPSSETAASYEETGERRRRYRGVRQRPWGKWAAEIRDPHKAARVWLGTFDTAEAAARAYDEAALRFRGNRAKLNFPENVRAVTPPIQTFPATATQFRHPTVAAAATPQPYQPPFMQHQQQQPQLQGSSDLIRDYLEYSLLLQSSGDFHQQQLQQQQQQQQQQPASSLQQWYYNSQLAALQSSSSSSSSSLLFSPLPSSLSSSSASFSVSPSGSSHQPPPVSLPLFPSQQMGFFQPPENRPDGGSGIGGLDFPPSTWSDTSGYPPPPG* 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2890 477 MobiDBLite consensus disorder prediction 179 199 - -
Dod02g2890 477 Gene3D AP2/ERF domain 228 288 IPR036955 GO:0003700|GO:0006355
Dod02g2890 477 ProSiteProfiles AP2/ERF domain profile. 229 286 IPR001471 GO:0003700|GO:0006355
Dod02g2890 477 MobiDBLite consensus disorder prediction 47 70 - -
Dod02g2890 477 MobiDBLite consensus disorder prediction 316 336 - -
Dod02g2890 477 SUPERFAMILY DNA-binding domain 229 287 IPR016177 GO:0003677
Dod02g2890 477 MobiDBLite consensus disorder prediction 174 233 - -
Dod02g2890 477 MobiDBLite consensus disorder prediction 114 161 - -
Dod02g2890 477 SMART rav1_2 229 292 IPR001471 GO:0003700|GO:0006355
Dod02g2890 477 CDD AP2 237 288 IPR001471 GO:0003700|GO:0006355
Dod02g2890 477 PRINTS Ethylene responsive element binding protein signature 230 241 IPR001471 GO:0003700|GO:0006355
Dod02g2890 477 PRINTS Ethylene responsive element binding protein signature 252 268 IPR001471 GO:0003700|GO:0006355
Dod02g2890 477 MobiDBLite consensus disorder prediction 412 477 - -
Dod02g2890 477 MobiDBLite consensus disorder prediction 114 162 - -
Dod02g2890 477 MobiDBLite consensus disorder prediction 321 336 - -
Dod02g2890 477 MobiDBLite consensus disorder prediction 23 70 - -
Dod02g2890 477 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF110 68 446 - -
Dod02g2890 477 PANTHER DNA-BINDING DOMAIN 68 446 IPR044808 GO:0003700|GO:0009873
Dod02g2890 477 Pfam AP2 domain 229 278 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2890 Dod-Chr2 61106273 61110457 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2890 221 304 AP2-EREBP Transcription Factor Family AT2G33710 70.238 1.90e-35 130
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Dod02g2890 AP2 9.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2890 - - ahf:112803013 344.354
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g1870 01 53471796 53474079 Dod02g2890 02 61106273 61110457 PCT
Dod02g2890 02 61106273 61110457 Dod06g0906 06 11518316 11520841 PCT