Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2863 ATGAGAAGAAGAGGGAGAGAGCTTCTTAGCCTTTGTTTTTCTCTACACTCATTATTGAAGCGTGACCCATTTGCTAAATCACCATCCCTTGCTTGTGGCTTGCATGGAAGTACTAGTACTTTCTCAGCCTCTTCTTCCTCTAGAAGCCCTTGTGTTGAAAAGGAAAAGGTATCATCACCATCCAAGCCCGAGAGGGATTCAATGATTCTGGACCAGTTCAGACAAAGGAAACTCAAAGGGTCTTCAAAAGATTCAAAGGGCAATGATGATGATGATTCTAGTGCAGAGAAGGTGGCTGAGAAGGGTTTGCAGAATGAGGGTGAGTCCACTATGGTGGTTTCCAACTTTAAGGAGTTGGGTGTGAGTGAGGAGCTTGCTGAGGTGTTGGATGGGACTGGTGACTTTGTTCCAAGTGAGATACAATGTGTGGTTATTCCAGCTATTTTGGATGGGAAGAGTGTGTTGTTGAGTTCACCAGCTGAGCCTGACAGAACTTTAGCCTACTTGTTGCCCCCTTATTCAGCTGCTGAGAAGGAATGGAGAATGGCTAAGTTCAAATTCAAAGCATCCCCGAGCTATTGTGGTTTGTGCTACAGAGGAGAAAGCTGCACAGGTGGCCGTGTCCCTACTACCATCATTATCTGCTTCAGTGGTGCAGAATATATAATCCAGAACGCAAAATTGAAGTTGGCAAAGGATCATGCTTCCCCAGATATCAGGCAGTCAAATGGCTCAATTGGCCTCCTAATTGGAACTCCTTCTGAGATTCTTCGATTCATTGAAGAGGGGAGTGTTGTTCCTGCTGAAATAAGATATTTGGTATTGGACGAGGTAGATTTCATGCTTGGCAATGGCCTTGGTTCTGAAATCCACAAGATTCTCAAACCATTGCAAGATCATGAATCAAAATCTAGTGTCAAAAGATTGCAAACTGTTTTGGTTACATCAGCGATTACTGAGATTCTGGGTGATCAATCCCCCATTGTGAAGCATCTTGAGCGTGATCATGCAGGAAATGTTTCTGCAATGTCTTTGGAAATGGATCAAACAGAAGTCTTTAACTATACAGAGTCCATGGATGCTCTTAGGAAAAAAGTGGCAGAGGCCATGGATACCCTTCTGTAA 1125 0.4373 MRRRGRELLSLCFSLHSLLKRDPFAKSPSLACGLHGSTSTFSASSSSRSPCVEKEKVSSPSKPERDSMILDQFRQRKLKGSSKDSKGNDDDDSSAEKVAEKGLQNEGESTMVVSNFKELGVSEELAEVLDGTGDFVPSEIQCVVIPAILDGKSVLLSSPAEPDRTLAYLLPPYSAAEKEWRMAKFKFKASPSYCGLCYRGESCTGGRVPTTIIICFSGAEYIIQNAKLKLAKDHASPDIRQSNGSIGLLIGTPSEILRFIEEGSVVPAEIRYLVLDEVDFMLGNGLGSEIHKILKPLQDHESKSSVKRLQTVLVTSAITEILGDQSPIVKHLERDHAGNVSAMSLEMDQTEVFNYTESMDALRKKVAEAMDTLL* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2863 374 Pfam DEAD/DEAH box helicase 228 317 IPR011545 GO:0003676|GO:0005524
Dod02g2863 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 50 1 374 - -
Dod02g2863 374 SUPERFAMILY PABC (PABP) domain 320 373 IPR036053 GO:0003723
Dod02g2863 374 MobiDBLite consensus disorder prediction 55 103 - -
Dod02g2863 374 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 110 320 IPR027417 -
Dod02g2863 374 MobiDBLite consensus disorder prediction 37 54 - -
Dod02g2863 374 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 145 317 IPR014001 -
Dod02g2863 374 Pfam Poly-adenylate binding protein, unique domain 327 373 IPR002004 GO:0003723
Dod02g2863 374 PANTHER DEAD-BOX ATP-DEPENDENT RNA HELICASE 39-LIKE 1 374 - -
Dod02g2863 374 MobiDBLite consensus disorder prediction 37 104 - -
Dod02g2863 374 ProSiteProfiles Poly(A)-binding protein C-terminal (PABC) domain profile. 301 374 IPR002004 GO:0003723
Dod02g2863 374 SMART poly_2 314 373 IPR002004 GO:0003723
Dod02g2863 374 Gene3D - 61 324 IPR027417 -
Dod02g2863 374 Gene3D - 325 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2863 Dod-Chr2 60847302 60849238 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2863 327 373 Eukaryotic Initiation Factors Gene Family AT4G34110 55.319 3.81e-08 53.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2863 - - gmx:100800575 397.512