Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2828 ATGGGGTGTTTAGATATGATGTGTTCCTCAATTTTAGAGGTACGGACACACGCCCTGGTTTCGCTCGCAATCTCTTCGAATCACTGCATGCGCAGGGGAATCCCCACTTTCTTTGATGCCCAAGTGGTTAAAATAGGTGAAAACATTCCCCCATCTCTTTGTACAGCCATTGAAGGATCTAGGATCGCCATCGTTGTTTTCTCCAAGGACTATGCCTCCTCGCATCATTGCTTGGATGAGCTTGTGCGCATCCTTGAGTGCTCTGAGGGAGAGAAGGCATGTACAATGGTGTGGCCAGTATTTTATTATGTCGATCCTTCGCAGGTTCGAAAGCAGAGTGGAAGCTATGGTGAAGCATTCGCAAGCCATGAGAAGGAACACAGCCTAGACAGGTTGAAAAAATGGAGGAACGCTTTGTCCAAAGCAGCTGACTTATCAGGCTGGGTAGTCGGGAACAAAGAATATGAATGTGATGTGATTGATAAGATCACTGAAGAAGTGTGCAATAGGATTCAGCCCTCGCCATCATGTGGCGGCGCCATGGGCCGCAACAATATGACTACGGCTCCAACCTCATCCTCATCATCATCATCTTCTTCCTCCGTGATGAGGATGGTTCTCACCCCCCATCAGAAGGCGTTCTGCGTCAAAGCACTCGAGTTCTTCAAGGACAAGTTCTCGACACGGTCCACAATCACTAAAGAGTTTGCCGACTTGCAGGGATGCTTTGGCCTGCGAAATATTCGGCAGCCACCTCAACCACAACAGAATCGGGATGGAGCCCATGCAACCATCTCCGAAGTAGGACGCATCCGCAACAATGAGCTCGCACATACAGCTTTCACTCGGCCGCGATTGCAACAACAATCGCAACCACAACTACAACCGCAACAGCAGCAACAACAACAACAACAGTCGCAACTGCGACCGCATCCACCTAACAATCGTGAGAGTGCGGTAGGAATAATAGGAAGCAATCGTAGTTATAGCCAAAACCACAACCACAGACCCATAGGCATTAGACAATCGCATCCACTGCAGCTGCACAACATGGCCCATAACTATCACACATCACAATGGCGTTCATCAGGCATCCACATGCAGGCCCAACCTCGACATGCGCCCAGAGACGTTCCACTGAGATTTTCACAGTATGTGACCATCATTTTCTTAAAAATGCACATCTTTACTGAACATGACCTACACCACAGGGCTATATCAATGCAAGCTTCATTCCGACTGCAAAACCCTGAAATGGTTTCCGGGTTTATTGCCACACAAGGCCCACTACCCCACACTTACAAGAGTTTCTGGGAGATAATTACCCGACATGGCTGCCCTGCAATTGTGATGCTAACTAGGTTGGTTGAAGACGCCAAGCATGGAGATTATTTTCATGCTGGGATCGGACCTAAAGAGTTTGGTAATATCGCTGTAATCACTAAGAGTGTGCAAGCTACTGCGACTTCACTGGTTGTGCGTGTTTTGGGGGTGAACTGTTATAGAGAGCTACAAAATGCATCCTTGTCTGTTATGCATATTCAGTATCCTGAATGGCCTAGCCATGGAGTTCCCAGTGATACAATTGCTGTGCGTGATATTTTCAGAAGATTATACCATTTTCCTCCAAACCTGGGCCCAATAGCCGTGCACTGCAGTGGAGGTGTCGGTAGAACTGGTACATACTGCGCAATTCATAACACAATTCAGAGAATCCTTGCTGGGGATATGACTGCTTTGGATCTTGCTAACACCGTAGCTGTGTTTAGGTCCCAACGTATTGGAATGGTTCAGACACAGGTGATAAGTACTGGCTTTGGTAATTTAATCATGTAG 1836 0.4744 MGCLDMMCSSILEVRTHALVSLAISSNHCMRRGIPTFFDAQVVKIGENIPPSLCTAIEGSRIAIVVFSKDYASSHHCLDELVRILECSEGEKACTMVWPVFYYVDPSQVRKQSGSYGEAFASHEKEHSLDRLKKWRNALSKAADLSGWVVGNKEYECDVIDKITEEVCNRIQPSPSCGGAMGRNNMTTAPTSSSSSSSSSSVMRMVLTPHQKAFCVKALEFFKDKFSTRSTITKEFADLQGCFGLRNIRQPPQPQQNRDGAHATISEVGRIRNNELAHTAFTRPRLQQQSQPQLQPQQQQQQQQQSQLRPHPPNNRESAVGIIGSNRSYSQNHNHRPIGIRQSHPLQLHNMAHNYHTSQWRSSGIHMQAQPRHAPRDVPLRFSQYVTIIFLKMHIFTEHDLHHRAISMQASFRLQNPEMVSGFIATQGPLPHTYKSFWEIITRHGCPAIVMLTRLVEDAKHGDYFHAGIGPKEFGNIAVITKSVQATATSLVVRVLGVNCYRELQNASLSVMHIQYPEWPSHGVPSDTIAVRDIFRRLYHFPPNLGPIAVHCSGGVGRTGTYCAIHNTIQRILAGDMTALDLANTVAVFRSQRIGMVQTQVISTGFGNLIM* 612
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2828 611 SUPERFAMILY Toll/Interleukin receptor TIR domain 31 148 IPR035897 -
Dod02g2828 611 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 532 600 IPR000387 GO:0016311|GO:0016791
Dod02g2828 611 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 422 600 IPR029021 -
Dod02g2828 611 MobiDBLite consensus disorder prediction 284 320 - -
Dod02g2828 611 ProSiteProfiles PTP type protein phosphatase domain profile. 408 599 IPR000242 GO:0004725|GO:0006470
Dod02g2828 611 ProSitePatterns Tyrosine specific protein phosphatases active site. 550 560 IPR016130 GO:0016311|GO:0016791
Dod02g2828 611 Gene3D - 22 175 IPR035897 -
Dod02g2828 611 ProSiteProfiles TIR domain profile. 1 171 IPR000157 GO:0007165
Dod02g2828 611 SMART PTPc_3 385 611 IPR000242 GO:0004725|GO:0006470
Dod02g2828 611 PANTHER PROTEIN-TYROSINE-PHOSPHATASE PTP1 409 600 - -
Dod02g2828 611 SMART ptp_7 510 604 IPR003595 -
Dod02g2828 611 Pfam Protein-tyrosine phosphatase 421 600 IPR000242 GO:0004725|GO:0006470
Dod02g2828 611 PRINTS Protein tyrosine phosphatase signature 423 443 IPR000242 GO:0004725|GO:0006470
Dod02g2828 611 PRINTS Protein tyrosine phosphatase signature 547 565 IPR000242 GO:0004725|GO:0006470
Dod02g2828 611 PRINTS Protein tyrosine phosphatase signature 580 595 IPR000242 GO:0004725|GO:0006470
Dod02g2828 611 PRINTS Protein tyrosine phosphatase signature 509 526 IPR000242 GO:0004725|GO:0006470
Dod02g2828 611 MobiDBLite consensus disorder prediction 179 203 - -
Dod02g2828 611 Gene3D Protein tyrosine phosphatase superfamily 271 602 IPR029021 -
Dod02g2828 611 SMART till_3 15 145 IPR000157 GO:0007165
Dod02g2828 611 PANTHER RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE 409 600 - -
Dod02g2828 611 Pfam TIR domain 31 179 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2828 Dod-Chr2 60506282 60512557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2828 332 599 Protein tyrosine phosphatase (PTP) family AT1G71860 49.455 5.90e-85 267
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2828 - - pvu:PHAVU_007G087900g 273.863