LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g2811	ATGGCCAAAGACCTTGAGGTTGCAGAGCGTGGCTCCTTCTCTGCAAAGGACTACCATGACCCTCCACCGGCACCACTCATTGATGCTGAGGAGCTCACACAGTGGTCATTCTACAGGGCCATCATAGCTGAGTTCATCGCCACGCTCCTCTTCCTTTACATCACTGTGCTCACTGTGATTGGTTACAAGAGCCAGAGTGATACCAAGGCTGGTGGTGATGTCTGTGGTGGGGTTGGCATTCTTGGCATTGCTTGGGCCTTTGGTGGCATGATCTTCATCCTTGTTTACTGCACTGCTGGAATCTCAGGGGGTCACATTAACCCAGCAGTGACATTTGGGCTCTTCTTGGCTCGCAAGGTGTCATTGATCAGAGCCATATTGTACATGGTGGCTCAGTGCTTGGGGGCTATCTGTGGAGTTGGGTTGGTCAAGGCCTTCCAGAAGGCTCTCTACAACAGGTATGGTGGTGGTGCCAATGAACTCAGTGATGGCTACAGCACTGGCACTGGATTGGGTGCTGAGATCATTGGAACCTTTGTTTTGGTATACACTGTCTTCTCTGCCACTGACCCTAAGAGGAATGCAAGAGATTCTCATGTCCCGGTTTTGGCTCCACTTCCCATTGGATTTGCTGTGTTCATGGTTCACCTGGCCACCATCCCAGTCACTGGCACTGGCATTAACCCTGCAAGGAGTCTTGGAGCTGCTGTTATCTACAACCAAGATAAGGCCTGGGATGACCATTGGATCTTTTGGGTAGGACCATTCATTGGGGCAGCCATTGCAGCCTTCTACCACCAATTTATCTTGAGGGCAGGTGCAGCTAAGGCTCTTGGATCATTCAGGAGCAACCCCACTGTTTGA	864	0.5116	MAKDLEVAERGSFSAKDYHDPPPAPLIDAEELTQWSFYRAIIAEFIATLLFLYITVLTVIGYKSQSDTKAGGDVCGGVGILGIAWAFGGMIFILVYCTAGISGGHINPAVTFGLFLARKVSLIRAILYMVAQCLGAICGVGLVKAFQKALYNRYGGGANELSDGYSTGTGLGAEIIGTFVLVYTVFSATDPKRNARDSHVPVLAPLPIGFAVFMVHLATIPVTGTGINPARSLGAAVIYNQDKAWDDHWIFWVGPFIGAAIAAFYHQFILRAGAAKALGSFRSNPTV*	288

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod02g2811	287	PRINTS	Major intrinsic protein family signature	87	111	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod02g2811	287	PRINTS	Major intrinsic protein family signature	173	191	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod02g2811	287	PRINTS	Major intrinsic protein family signature	249	269	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod02g2811	287	PRINTS	Major intrinsic protein family signature	124	143	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod02g2811	287	PRINTS	Major intrinsic protein family signature	39	58	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod02g2811	287	PRINTS	Major intrinsic protein family signature	209	231	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod02g2811	287	SUPERFAMILY	Aquaporin-like	31	271	IPR023271	-
	Dod02g2811	287	Gene3D	Glycerol uptake facilitator protein.	24	287	IPR023271	-
	Dod02g2811	287	CDD	MIP	39	269	IPR000425	GO:0015267\|GO:0016020\|GO:0055085
	Dod02g2811	287	Pfam	Major intrinsic protein	31	266	IPR000425	GO:0015267\|GO:0016020\|GO:0055085

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod02g2811	Dod-Chr2	60381645	60385495	Dispersed/Transposed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod02g2811	1	287	Major Intrinsic Protein MIP	AT2G37170	84.669	0.0	501

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod02g2811	K09872		-	gmx:547857	545.428

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