LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g2809	ATGGGAAGCTTGTGGAAGAAAGCAAAGGTGGCGCTGCGTTTCATTCTCAATCTCAAGCAATCATCAAGTGTTCATGGGAGGGGCTGGTTGCACGACCACCATGACCATGACTATGACTACTTACCTCCTGAATCTTATCACAGGTTCATCTCATCACCATATCTTGATCTCAGTTCGGACCTCTCTTCATCTTTCCAAAGCTTCAGCCTCTCCTCCACAACTTCCACCAAATCTTCCAAGAGTCAGAGAACCTGCTCAATATGCCTAACCAAAATGAAAGAAGGAAGGGGCCGTGCCATATTCACTGCAGAATGTTCACATTCTTTCCATTTGCACTGCATTGTTTCAAATGTGAAACATGGAAATCAAATATGTCCACTATGCAGAGCCAAGTGGAAGGAAGTACCTCCATTGGCTACAGGAAACCAAAGATCTCGCCGCCACCCTCTCCCTGCACCTCCCCATCAAAGAGATTTGAATCCTGAGCCGTTTGATGATGATGAACCCTTAAACCACCAACATGCAATTTCCAGTGATAGAAGCTCTCGCAGCAAAAGTATTGCTGATGATGATACACATGTAATTAAAGCAATAGAGATCAAAACATATCCAGAAGTGTCAGCTATTCCAAGGTCTAATGCCTACAGCAACTTCACAATTCTGGTCCATATCAAAGCTGGTGCTGCTGCTGTAGCCAAAGAACAGGTCTTCAGCAGAAACTACCATACTCACTTGACACAGCTTTCTGAGACTCCACCTGCCCCAATTGACCTGGTCACTGTGCTTGACATCAGTAGTAGCATGGCTGGAACCAAGCTTGCACTAGTAAAAAAAGCCATGAGATTTGTGATACATAACCTTGGCCCCAATGACAGGCTATCTGTCATTGCCTTCTCTTCGACGGCCCGCCGCCTCTTTCCATTGCTTAGGATGTCTGATTCTGGGAGGAAAATCGCACTGCGAGCCGTTAACTCTTTGGTTGCAGATGGTGGCACATATATTGCTGCAGGGCTGAGCAAAGGTGCTAAGGTAATGGAAGACCGCAAAGAGAAGAACCCAGTTGCCAGCATCATGCTGCTATCTGATGGCCAAGACACCTACATTGGCAACACCTATGGTGCTAACCAACTATTTCCACCAAATTACAAATTAAATCTGCCAGCTTCTCTCAGTGGTCGTGATGATAAAACTGGATTGCAGATTCCTGTGCATACTTTTGGTTTTGGTGCAGATCATGATGCTTTGTCAATGCACACAATTGCAGAGATTTCTGGGGGAACATTCTCCTTCATTGAGACTGGTGCTGTGATACAAGATGCATTTGCACAATGCATTGGAGGACTCCTCAGTGTTGGTCTTCAGAAGGTGAAGGTGACAATTAAGTGCACAAACCCATGTCTCAGTCTTGTGTCACTCAAGGCTGGAAGTTATCCAAGCTTGGTGTTGGGTGGTGGACACGAGGCATATGTTCATGTTGGAGACATGTATGCTGATGAAGAGAGGGATTTCCTAGTCTCAGTTAATGTCCCAGCTACTTCTCGCAGTGAAACAGCATTGGTAAAGGTTAAATGTGGTTACAAGGATCCGTTAACACAGGAAAAGAAAACATTGGAGAGTGCAGAACTGACGATTGAGAGGCCTGAAATAGCGGGGGAAGCTGTTATGTCACTTGAAGTGGACAGACAGAGAAACAGGTTCCATGCAGCTGAGGCAATGGCAGAGGCAAGAGGTGTGGCTGAACAAGGGGACCTAGCTGGTGCAGTGTTGATCCTTGAAGATTGTAGGAAGATGCTTTCAGAGACTGTTTCACATAAATCTATGGACCGTCTTTGTGTTGCATTGGATGCTGAACTGAAGGAGATGCAAGATAGGATGGCTAGTAGGCATGTATATGACGCCTCTGGAAGAGCATATATGCTTTCAGGGCTGAGTTCACACTCATGCCAAAGAGCAGCAGCAAGGGGTGATTCCACTGACAGTTCAAGTCTTGTTGAAGTATATCAGACACAATCAATGGTTCAGATGCTTACTAGATCTCAGACCTTGTCAATAGGTAGTTCTTCAAGCTATTAG	2073	0.4544	MGSLWKKAKVALRFILNLKQSSSVHGRGWLHDHHDHDYDYLPPESYHRFISSPYLDLSSDLSSSFQSFSLSSTTSTKSSKSQRTCSICLTKMKEGRGRAIFTAECSHSFHLHCIVSNVKHGNQICPLCRAKWKEVPPLATGNQRSRRHPLPAPPHQRDLNPEPFDDDEPLNHQHAISSDRSSRSKSIADDDTHVIKAIEIKTYPEVSAIPRSNAYSNFTILVHIKAGAAAVAKEQVFSRNYHTHLTQLSETPPAPIDLVTVLDISSSMAGTKLALVKKAMRFVIHNLGPNDRLSVIAFSSTARRLFPLLRMSDSGRKIALRAVNSLVADGGTYIAAGLSKGAKVMEDRKEKNPVASIMLLSDGQDTYIGNTYGANQLFPPNYKLNLPASLSGRDDKTGLQIPVHTFGFGADHDALSMHTIAEISGGTFSFIETGAVIQDAFAQCIGGLLSVGLQKVKVTIKCTNPCLSLVSLKAGSYPSLVLGGGHEAYVHVGDMYADEERDFLVSVNVPATSRSETALVKVKCGYKDPLTQEKKTLESAELTIERPEIAGEAVMSLEVDRQRNRFHAAEAMAEARGVAEQGDLAGAVLILEDCRKMLSETVSHKSMDRLCVALDAELKEMQDRMASRHVYDASGRAYMLSGLSSHSCQRAAARGDSTDSSSLVEVYQTQSMVQMLTRSQTLSIGSSSSY*	691

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod02g2809	690	Pfam	VWA / Hh protein intein-like	608	681	IPR032838	-
	Dod02g2809	690	SMART	ring_2	85	128	IPR001841	-
	Dod02g2809	690	Pfam	von Willebrand factor type A domain	257	441	IPR002035	-
	Dod02g2809	690	CDD	vWA_C3HC4_type	256	432	-	-
	Dod02g2809	690	Gene3D	von Willebrand factor, type A domain	257	446	IPR036465	-
	Dod02g2809	690	SUPERFAMILY	vWA-like	252	445	IPR036465	-
	Dod02g2809	690	SMART	VWA_4	255	441	IPR002035	-
	Dod02g2809	690	PANTHER	CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR	71	136	-	-
	Dod02g2809	690	PANTHER	CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR	155	687	-	-
	Dod02g2809	690	ProSiteProfiles	Zinc finger RING-type profile.	85	129	IPR001841	-
	Dod02g2809	690	PANTHER	OS10G0464500 PROTEIN	155	687	-	-
	Dod02g2809	690	ProSiteProfiles	VWFA domain profile.	257	445	IPR002035	-
	Dod02g2809	690	MobiDBLite	consensus disorder prediction	139	188	-	-
	Dod02g2809	690	CDD	RING-H2	85	129	-	-
	Dod02g2809	690	Pfam	RING-like zinc finger	85	114	IPR001841	-
	Dod02g2809	690	PANTHER	OS10G0464500 PROTEIN	71	136	-	-
	Dod02g2809	690	SUPERFAMILY	RING/U-box	84	136	-	-
	Dod02g2809	690	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	53	134	IPR013083	-
	Dod02g2809	690	MobiDBLite	consensus disorder prediction	159	174	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod02g2809	Dod-Chr2	60350845	60355217	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod02g2809	73	131	C3H Transcription Factor Family	AT4G12190	40.984	8.15e-06	42.4

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod02g2809	-		-	adu:107467927	803.512