Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2795 ATGGATCAGAAAGGGAGCCTATGTACTAACACCTGGCCTCGGCCGGCTTCCGTAACCTCTCCTGGGAATGGATTACAGACAAATTTATCCTCTGATCCTCCCTCTTTCCCAGGTTTTGGTTTGCAGCAAGATCCACATAAATGGGACGATCCCTCTATTTTAGATTACAGCGAAAGGGTAGAATCACTTTTCAAAGAATTGAGCCAACCCTCTCAAACCCAGTATATGCATTCATGCAACTCCAACAATGAAATCAAGATTGCTGATCGAGAAAACTGTGCACCAAGTGACTCATCCCAAACCCTTAAACTCCAAAATTGGGATCCTAGTGTGATTTTGAATAACCTTTCCTTCTTGGAAGAAAAGATTCATCAACTTCAGGATCTTGTGCGCTTGATTGTTAGTCAAAATGGCCAACCCCTTGCACAACCTAATGACCCTGTAACTCAGGAACAACAACAGCTCATCACTGCTGATCTTACATCAATTGTTGTTCAGTTGATCTCTTCTGCAGGTATTCTTCTCCCTTCTGTTAGGCATACCCTTCCAAACACTAGGCCATTAGTTGGGCAGCTTTGCCAGCTTCAGGGGATTACTGTTCCTTCTGGGTCAGGCCCAAGTAGCAGCTGTGTTCAACCACAAAATAGTAAGGCAAATAAATTGTCTGACCAGTCCCCGCAGAATGATCTACCTAATAACCGTGAAATGGAGCAAAAGTACAATATGGAAGAACATGAACTGAAAGATGATGATGATGTGGATGATGGTGAAAACCTTCCACCTGGTTCCTATGAGATTTTACAATTAGAAAAAGAAGAAATCCTCGCGCCCCATACGCATTTTTGTACAATTTGTGGGAAGGGGTTCAAGAGAGATGCAAATCTTCGAATGCACATGCGAGGCCATGGTGACGAGTACAAAACCCCAGCCGCACTTGCAAAACCACACAAAGAATCTGGGTCTAAACAAAAGCTTATCAAGAGGTATTCCTGCCCATATACTGGCTGCAAGCGTAATAAGGATCACAAGAAGTTTCAGCCTCTGAAGACAATTTTGTGTGTCAAAAACCATTACAAAAGAACACACTGTGATAAAAGTTACACTTGCGGCAGATGCCACATCAAGAAGTTTTCGGTCATGGCAGATCTTAAAACTCATGAAAAACACTGTGGTAGGGATAAATGGCTTTGTTCATGTGGCACAACATTTTCAAGGAAAGACAAGCTTTTTGGACACATCGCTCTTTTCCAAGGTCATACACCGGCCATTCCCGTTGAAGACACTAAAGGATCGGCTGGCCCACCGGATCTCAACAGCAAGGAAAATGGTAAGGGAGCGAGTATGAACTTCAGTTTTGGATTAACTCCTTCAGGTGAAAATGGAGTTCAAAATGTCATGGGTGTAAAAGGTAGTGTTGATGATCCTATCAATTATTTCTCATCATTTGAAGCTAATTTTGGTGGCTTTAATGAATTCACTCAACCACAATTTGAAGACTCAGAAGATGGTTCTTTCTCTTTTCTCATCCCAGGATCTTTCAAATCTGGAGGACAATCGAGTTCTGATAATCTTTTGTGA 1578 0.4227 MDQKGSLCTNTWPRPASVTSPGNGLQTNLSSDPPSFPGFGLQQDPHKWDDPSILDYSERVESLFKELSQPSQTQYMHSCNSNNEIKIADRENCAPSDSSQTLKLQNWDPSVILNNLSFLEEKIHQLQDLVRLIVSQNGQPLAQPNDPVTQEQQQLITADLTSIVVQLISSAGILLPSVRHTLPNTRPLVGQLCQLQGITVPSGSGPSSSCVQPQNSKANKLSDQSPQNDLPNNREMEQKYNMEEHELKDDDDVDDGENLPPGSYEILQLEKEEILAPHTHFCTICGKGFKRDANLRMHMRGHGDEYKTPAALAKPHKESGSKQKLIKRYSCPYTGCKRNKDHKKFQPLKTILCVKNHYKRTHCDKSYTCGRCHIKKFSVMADLKTHEKHCGRDKWLCSCGTTFSRKDKLFGHIALFQGHTPAIPVEDTKGSAGPPDLNSKENGKGASMNFSFGLTPSGENGVQNVMGVKGSVDDPINYFSSFEANFGGFNEFTQPQFEDSEDGSFSFLIPGSFKSGGQSSSDNLL* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2795 525 ProSitePatterns Zinc finger C2H2 type domain signature. 282 302 IPR013087 -
Dod02g2795 525 ProSiteProfiles Zinc finger C2H2 type domain profile. 280 307 IPR013087 -
Dod02g2795 525 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 49 512 IPR044300 GO:0010044|GO:0010447
Dod02g2795 525 SUPERFAMILY beta-beta-alpha zinc fingers 278 305 IPR036236 -
Dod02g2795 525 MobiDBLite consensus disorder prediction 1 37 - -
Dod02g2795 525 Gene3D Classic Zinc Finger 264 335 - -
Dod02g2795 525 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 49 512 - -
Dod02g2795 525 MobiDBLite consensus disorder prediction 1 44 - -
Dod02g2795 525 MobiDBLite consensus disorder prediction 203 233 - -
Dod02g2795 525 SMART c2h2final6 280 302 IPR013087 -
Dod02g2795 525 SMART c2h2final6 367 389 IPR013087 -
Dod02g2795 525 SMART c2h2final6 329 362 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2795 Dod-Chr2 60222011 60225158 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2795 247 525 C2H2 Transcription Factor Family AT1G34370 67.808 2.49e-129 377
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Dod02g2795 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2795 - - gmx:100500526 756.903