Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2722 ATGCAGCGTCGCCGGAGACCTGGCCGGCCACCGGCGAAGAGTGAACATCCTAACAGTTTTGTGAAGATCATACTTCCCTCTGCCATTCATGGCAACCAAACAAGAATTCCTGAGGCGTTTATAAGAGGTTTCAGAGGTGAGCTGTCGGCCTTTGCTAGAATCAGTGTTCCCAATGGTGGTCACTGGGAAGTGGGATTGAAGAAATGTGGTAAAGACGATGTTTGGTTTTGCACCAATTGGCGCGAGTTTGCAAAGTACTACTCCATCAGCTATGGTTTCGTCCTGACTTTCGATTACCAAGGGGATTCAGAATTTTATGTTCGTATATATGATACTAGTGCCACTGAGATTCGCTACCCCCGCAACGCTCGGGGTCAGGGAAGTCCAAGGAAAAGGTCCAGGGTGCACCATCAAGATCAAGCCTCCTTTGGCTATGATGAGTACGAGGGAAGAAGCAAAAAGGATAAGGAGTATGACATAACTACTGATCATGTAGACAGTAATGTGAATTTACCAAGGAAGAATCAAAGGTCCACTTTTCTTGGAAGACAAGGCAAAAGCCCAGCATGTAACCGAAAACACACTGGTACAGCACTGTCCAACTCCAACTCTTCTTCAAAAAGAGCAAAGGAGGCTGCCACTAAACTCAAGCCCAAAAACCCTTGTTTTAAGGCAGCCGTTAGGAGCTATGCTGTGGTGATGTATATTCCTGCTGAATTTGCTGCAAAGCATCTCAAGTTGAAGCAGTGTATCAAGCTCCAAAATTGTGACGGACAAAGATGGGATGCTAACTGCTTATTTCATCGTCGCGCATCAGCAGCTATGCGACTAGGGCAGGGATGGAGCAGGTTCGCGAGGGAGAACCATGTCTCAGAAGGAGACGTTTGTGTGTTTGAGATGATCAAGCGGAGACCAGTTGTGCTAAAAGTTGGAATCTCGCGTGCAGATGAATGTGGCAATTCACGTAGGCACTGA 975 0.4697 MQRRRRPGRPPAKSEHPNSFVKIILPSAIHGNQTRIPEAFIRGFRGELSAFARISVPNGGHWEVGLKKCGKDDVWFCTNWREFAKYYSISYGFVLTFDYQGDSEFYVRIYDTSATEIRYPRNARGQGSPRKRSRVHHQDQASFGYDEYEGRSKKDKEYDITTDHVDSNVNLPRKNQRSTFLGRQGKSPACNRKHTGTALSNSNSSSKRAKEAATKLKPKNPCFKAAVRSYAVVMYIPAEFAAKHLKLKQCIKLQNCDGQRWDANCLFHRRASAAMRLGQGWSRFARENHVSEGDVCVFEMIKRRPVVLKVGISRADECGNSRRH* 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2722 324 Gene3D - 202 318 IPR015300 -
Dod02g2722 324 MobiDBLite consensus disorder prediction 120 139 - -
Dod02g2722 324 MobiDBLite consensus disorder prediction 161 215 - -
Dod02g2722 324 Gene3D - 12 114 IPR015300 -
Dod02g2722 324 ProSiteProfiles B3 DNA-binding domain profile. 19 113 IPR003340 GO:0003677
Dod02g2722 324 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR VRN1 17 314 - -
Dod02g2722 324 CDD B3_DNA 19 111 IPR003340 GO:0003677
Dod02g2722 324 PANTHER B3 DOMAIN-CONTAINING 17 314 - -
Dod02g2722 324 SMART B3_2 222 316 IPR003340 GO:0003677
Dod02g2722 324 SMART B3_2 20 113 IPR003340 GO:0003677
Dod02g2722 324 Pfam B3 DNA binding domain 20 112 IPR003340 GO:0003677
Dod02g2722 324 Pfam B3 DNA binding domain 234 315 IPR003340 GO:0003677
Dod02g2722 324 SUPERFAMILY DNA-binding pseudobarrel domain 216 318 IPR015300 -
Dod02g2722 324 SUPERFAMILY DNA-binding pseudobarrel domain 17 113 IPR015300 -
Dod02g2722 324 ProSiteProfiles B3 DNA-binding domain profile. 219 316 IPR003340 GO:0003677
Dod02g2722 324 MobiDBLite consensus disorder prediction 164 209 - -
Dod02g2722 324 CDD B3_DNA 221 314 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2722 Dod-Chr2 59435810 59437909 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2722 20 318 B3 DNA Binding Superfamily AT3G18990 30.409 2.57e-37 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Dod02g2722 B3 2.3e-16 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2722 - - vun:114183160 218.394