Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2710 ATGCCTCTTGCTTCTGCAATAAAAAGATGGAGGTCACTTCCATGTGGAAACATGGCTATGAAGGGGGAATTCAAAGCGGAAGGTGGAGTTTTTTCATGTGGTTCCAATTGTGGAAGGAAACTTAGTTGTGGTAATCACATCTGCAGTGAGATTTGTCATCCAGGAAGCTGTGGGGAGTGTGATTTGTTACCAAGCCGTGTTAAGACATGCTGTTGCGGGAAAACAAGATTGGATGAGGAACGCCGGAGTTGTTTGGACCCAATACCTACCTGCTCACAAGTGTGTGCAAAGCCCCTTCCTTGTGGTGTACATCACTGTAAAGAGGCATGTCATGTTGGAGATTGTCCCCCTTGTTTAGTTCTAGTATCCCAGAAATGTCGTTGTGGATCAACTTCTCGAACTGTGGAATGCTATAGGACGACAACGGAGAACGGGAAATTTACTTGTGAAAAGCCTTGTGGGAGAAAAAAGAACTGTGGAAGACATCGGTGTAGTGAACGGTGTTGTCCACTTTCTAATCCCAGTAATAATCTAAGTGGGGATTGGGATCCTCACTTTTGTTCGATGCCATGTGAAAAGAAGCTAAGGTGTGGCCAGCATGCATGTGAATCCCTGTGTCACAGTGGTCATTGCCCGCCTTGTCTTGAAACCATCTTTACTGATTTGACATGTGCTTGTGGTAGGACATCAATCCCTCCTCCACTGCCTTGTGGTACACCGCCTCCTTCGTGTCAGCTCCCATGTTCAGTTCCTCAGCCTTGTGGCCATTCAGCCTCACACAGTTGCCATTTTGGAGACTGCCCTCCTTGTTCTGTGCCTGTAGCAAAAGAATGTATTGGTGGTCATGTAGTTCTCAGGAACATACCTTGTGGTTCAAAGGATATTAGATGCAATAAGCTCTGTGGGAAGACTAGACAGTGTGGCTTACATGCATGCGGCAAAACATGTCATCCCCCTCCTTGTGATAATCTCTCTGGCAGTGTGCAAGGTTTACCAGCGCCCTGTGGGCAAACTTGTGGTGCTCCCAGGAGAGACTGCCGTCATACATGTACGGCTCCATGTCACCCTTCTTCTCCATGCCCAGATATAAGATGTGAGTTCCCTGTTACAATTACCTGTTCTTGTGGCCGTATAACTGCAAGTGTTCCCTGTGATGCTGGTGGTTGCAGTGGTAATTATAACGCTGATGCTGTACATGAGGCTTCCATTATTCAAAAATTGCCTGTGCCACTTCAGCCAATTGATGTAAATGGCAAGAAAGTTCCCCTTGGACAAAGAAAGTTGATGTGTGATGATGAATGTGCTAAGTTAGAGCGTAAAAGGGTTCTTGCTGATGCTTTTGACATTACTCCTCCGAATCTTGATGCTCTCCATTTTGGTGAGAATTCTGTTGAATTGCTTTCTGACTTGTTCAGGCGTGATCCTAAATGGGTTTTATCTGTTGAGGAGAGATGCAAATTTCTAGTGCTTGGCAAGAGCCGAGGAACTACACATGGCTTGAAAGTCCATGTTTTCTGTCCTATGCTGAAGGAGAAAAGAGATGCAGTGAGGGTGATTGCTGAGAGATGGAAGCTAGCTGTGAATGCTGCTGGGTGGGAGCCAAAGCGTTTTATTGTAATTCATGTTACCCCAAAATCAAAGGCCCCAGCTCGTGTGCTAGGGGTTAAGGGCACCACAACCGTAAATGTGCCCCTTCCTCCTGCATTTGATCCCTTGGTAGACATGGATCCTCGGCTTGTTGTCTCGTTTCCAGATTTACCGCGGGAGGCTGACATTAGTGCCTTGGTGTTGAGATTTGGTGGCGAGTGTGAGCTCGTTTGGTTGAATGACAAAAATGCGCTGGCTGTTTTTAATGATCCTGCCCGAGCTGCAACTGCAATGAGGAGGTTGGACCATGGAACATTTTATCAGGGAGCTGTTTTGGTTGCCCTGAATGTTGGGGCTGCCGCATCTTCAGCTACAAGTGCCTGGGGAGGAGCTGGGACAATGAAAGAAGGAGGAGCACTGTCAGCATTGAAAGGTAATCCATGGAGAAAGGCAGCGGTTCAAGAGACTGGTTGGAGAGAAGACTCTTGGGGTGATGAAGAATGGACTACTGGTTCTGCTAATATCCAGCCTTCTGTTTGGAAGAAAGAAGCACCAATAACTGCGGCATTTAACCGATGGAATGTCTTGGACCAGGAATCGAGTTCAAGTTTGTCTGCATCTGTTAAAGCTGAAGTTTCAGGAAAACATGCTGAGAGTGGTGCTGTCTCAAGGTTGGAGTCTCATGCAGGTAGCTCAAATGAAGGGGGGCAACCTGGAGGGAACTTAGATGTAAGTGAAGGTTCTGAAGTAGTAGATGATTGGGAGAAGGCTTATGAATGA 2367 0.4677 MPLASAIKRWRSLPCGNMAMKGEFKAEGGVFSCGSNCGRKLSCGNHICSEICHPGSCGECDLLPSRVKTCCCGKTRLDEERRSCLDPIPTCSQVCAKPLPCGVHHCKEACHVGDCPPCLVLVSQKCRCGSTSRTVECYRTTTENGKFTCEKPCGRKKNCGRHRCSERCCPLSNPSNNLSGDWDPHFCSMPCEKKLRCGQHACESLCHSGHCPPCLETIFTDLTCACGRTSIPPPLPCGTPPPSCQLPCSVPQPCGHSASHSCHFGDCPPCSVPVAKECIGGHVVLRNIPCGSKDIRCNKLCGKTRQCGLHACGKTCHPPPCDNLSGSVQGLPAPCGQTCGAPRRDCRHTCTAPCHPSSPCPDIRCEFPVTITCSCGRITASVPCDAGGCSGNYNADAVHEASIIQKLPVPLQPIDVNGKKVPLGQRKLMCDDECAKLERKRVLADAFDITPPNLDALHFGENSVELLSDLFRRDPKWVLSVEERCKFLVLGKSRGTTHGLKVHVFCPMLKEKRDAVRVIAERWKLAVNAAGWEPKRFIVIHVTPKSKAPARVLGVKGTTTVNVPLPPAFDPLVDMDPRLVVSFPDLPREADISALVLRFGGECELVWLNDKNALAVFNDPARAATAMRRLDHGTFYQGAVLVALNVGAAASSATSAWGGAGTMKEGGALSALKGNPWRKAAVQETGWREDSWGDEEWTTGSANIQPSVWKKEAPITAAFNRWNVLDQESSSSLSASVKAEVSGKHAESGAVSRLESHAGSSNEGGQPGGNLDVSEGSEVVDDWEKAYE* 789
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2710 788 CDD NF-X1-zinc-finger 335 384 - -
Dod02g2710 788 PANTHER NF-X1-TYPE ZINC FINGER PROTEIN NFXL1 13 785 - -
Dod02g2710 788 CDD NF-X1-zinc-finger 187 230 - -
Dod02g2710 788 CDD NF-X1-zinc-finger 149 208 - -
Dod02g2710 788 SMART znfxneu3 159 193 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 SMART znfxneu3 307 337 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 SMART znfxneu3 101 120 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 SMART znfxneu3 197 216 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 SMART znfxneu3 43 62 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 SMART znfxneu3 254 272 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 SMART znfxneu3 346 367 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 CDD NF-X1-zinc-finger 91 139 - -
Dod02g2710 788 CDD NF-X1-zinc-finger 244 292 - -
Dod02g2710 788 Pfam NF-X1 type zinc finger 159 170 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 Pfam NF-X1 type zinc finger 197 214 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 Pfam NF-X1 type zinc finger 43 60 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 Pfam NF-X1 type zinc finger 101 118 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 Pfam NF-X1 type zinc finger 254 271 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 Pfam NF-X1 type zinc finger 307 322 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 Pfam NF-X1 type zinc finger 339 364 IPR000967 GO:0005634|GO:0008270
Dod02g2710 788 MobiDBLite consensus disorder prediction 754 768 - -
Dod02g2710 788 CDD NF-X1-zinc-finger 33 76 - -
Dod02g2710 788 MobiDBLite consensus disorder prediction 736 788 - -
Dod02g2710 788 PANTHER NUCLEAR TRANSCRIPTION FACTOR, X-BOX BINDING 1 NFX1 13 785 IPR034078 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2710 Dod-Chr2 59237360 59240679 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-X1 Dod02g2710 zf-NF-X1 13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2710 K12236 - gmx:106799700 1348.18