Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2701 ATGGTGTTAGGCTGGAGAAGAAGGAAGAACAACCACCACCACCGTTCAGGTGGGAAACCAAACATGGAGCTTGTGATTCCAAACCACTTCAAGTGCCCAATTTCCCTTGACCTGATGAAGGATCCTGTTACATTGTCCACAGGGATCACATATGATAGGGAAAGTGTTGAGAGGTGGTTTGATGATGGGAACTTCACATGCCCTGTCACAAACCAGATTGTGAGGAACTTTGACATGATTCCAAACCATTCTTTGAGGGTAATGATCCAAGACTGGTGTGTTGAGAATAGGCAGCATGGTGTTGAGAGGATCCCAACGCCAAGAATCCCAATCAGCCCAAATGATGTCTATGATCTTCTATTGCAAGTTAAGGACTCGGCGAGGCGATTGGACAAATATGGTTGCCTTGAATTGGTGCAGAAGTTGGAGAGGTGGGGTGGGGAGAGTGATAGGAACAAGAGGTGCATAGTGGACAATGGAGCACCAGGTGCACTGGCATCAGCATTTGATGCATTCTCAAATGATTCCATTGAGAGGAACGTGAGTGTCCTTGAGGAGATCTTGTCAGCACTCAATTGGATGTTTCCACTTCAGTTGGAGGCTCAGAGATCACTGGGGTCCAATGCTTCCCTACGATGCATGGTTTGGTTCTTGAAGCACCAAGATCTCTCAGGGAAGGAAAAGTCAATTGTTGCATTGAAGGAGCTTCTATCCTTTGGTGATGAGAAGCATGTGGAGGCTTTGTCAGAAATTGAAGGGGTCAATGACCTCTTGGTGGAGTTCATCAACAAGAGAATTAGTCCAACAATCACAAAGGCTTCATTGAGGGTAGTTTGGTACTTGGCCTCATCTTCTTCTCCTTGTGGTGAGAAGATGAAATTGGCATTTGTGGAATTGGGTTTGGTTTCTTATCTTCTTGACATCCTCATTGACTCAGAAAAGAGCCTTTGTGAGAAGGCCCTGGCTATCTTTGACTCCATTTGCAGCTGTGAAGAAGGGAGGGAAAAGGCTTATGGGAATGATCTAACAGTTCCTGTGTTGGTGAAGAAGATTCTGAGAGTTTCATCATTGACCACAGATTACTCTGTCTCTGCAATTTGGAAGATGTGCAAGCTTGGGGACAAAGAGAAAGAAGGGAGGGTTCTTGTTGAGGCACTTCAAGTTGGTTCCTTTCAGAAGCTCTTGTTGGTTTTGCAGGTTGGTTGTGGTGATGGGACAAAAGAGAAAGCCACTGAGCTTCTCAAAATGATGAATCCTTACAGGGCTGAATTGGAATGCATTGACTCAGATTACAAGAATCTCAAGAGATCATTTTAG 1317 0.4495 MVLGWRRRKNNHHHRSGGKPNMELVIPNHFKCPISLDLMKDPVTLSTGITYDRESVERWFDDGNFTCPVTNQIVRNFDMIPNHSLRVMIQDWCVENRQHGVERIPTPRIPISPNDVYDLLLQVKDSARRLDKYGCLELVQKLERWGGESDRNKRCIVDNGAPGALASAFDAFSNDSIERNVSVLEEILSALNWMFPLQLEAQRSLGSNASLRCMVWFLKHQDLSGKEKSIVALKELLSFGDEKHVEALSEIEGVNDLLVEFINKRISPTITKASLRVVWYLASSSSPCGEKMKLAFVELGLVSYLLDILIDSEKSLCEKALAIFDSICSCEEGREKAYGNDLTVPVLVKKILRVSSLTTDYSVSAIWKMCKLGDKEKEGRVLVEALQVGSFQKLLLVLQVGCGDGTKEKATELLKMMNPYRAELECIDSDYKNLKRSF* 439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2701 438 SUPERFAMILY ARM repeat 140 397 IPR016024 -
Dod02g2701 438 PANTHER WDSAM1 PROTEIN 12 438 IPR045185 GO:0061630
Dod02g2701 438 MobiDBLite consensus disorder prediction 1 20 - -
Dod02g2701 438 MobiDBLite consensus disorder prediction 1 15 - -
Dod02g2701 438 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 5 104 IPR013083 -
Dod02g2701 438 ProSiteProfiles U-box domain profile. 25 99 IPR003613 GO:0004842|GO:0016567
Dod02g2701 438 CDD RING-Ubox_PUB 30 72 IPR045210 -
Dod02g2701 438 Pfam U-box domain 26 97 IPR003613 GO:0004842|GO:0016567
Dod02g2701 438 SUPERFAMILY RING/U-box 22 102 - -
Dod02g2701 438 Gene3D - 120 416 IPR011989 -
Dod02g2701 438 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 12 438 - -
Dod02g2701 438 SMART Ubox_2 29 92 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2701 Dod-Chr2 59106654 59108270 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2701 5 438 U-box Gene Family AT5G37490 43.792 8.51e-119 352
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2701 - - gmx:100794340 746.117