Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2648 ATGGAGTATGGTAGTGGAGGGAGTGGTGGTTCACCAGGAGAACACCACCATCACCATCATCATCACCACAACGATGGTTCTTCTGAGAGAAGGAAGAAGCGATACCACCGTCACACTGCTAACCAGATTCAAAGGCTTGAAGCGATGTTCAAGGAGTGTAATCACCCAGATGAGAAGCAGAGAAATCAGTTAAGCAGGGAATTAGGCTTGGCACCTAGACAGATCAAATTCTGGTTCCAGAACAGGAGGACCCAGATGAAGGCCCATAATGAGAGAGCTGATAACAATGCACTCAGGGCAGAGAATGACAAGATACGATGTGAGAACATAGCCATAAGGGAGGCCCTCAAGAATGTTATGTGCCCCAGTTGTGGTATTCCTCCCCTTAATGAGGAATCTTACTTTGATGAGCAGAAGTTGAGGCTTGAGAATGCTCAACTCAAAGAGGAGCTTGATAGAGTCTCTAGCATTGCAGCTAAGTACATTGGAAGACCAATTTCTCAGCTCCCACCTGTTCAGCCTATTCACATATCCTCTCTGGACTTGTCAATGGGGAGTTTTGGGGGACGAGTGTTGGGTGGACCTTCCCTTGACCTTGATCTTCTCCCAGGGAGTTCATCGGCTGTGCCAAACGTGCCTTTCCAGCCGGCTGGCCTGTCGGACATGGACAAGTCCGTCATCTCAGATATTGCCTCAAATGCCATGGAGGAATTGCTTAGGCTTTTGCAGACAAATGAGCCCTTGTGGATGAAGTCAAGCACTGATGGCAGAGATGTACTTAACCTTGAAACCTATGATAGGATGTTCCCAAAGGCAAATTGTCACTTGAAGAACCCCAATGTTCGCACTGAAGCTTCTAGAGACTCAGGAGTTGTCATCATGAATGGCCTAACTTTGGTTGACATGTTCATGGACCCGAACAAGTGGATGGAGTTGTTTCCCACCATTGTGACTGTGGCAAGAACTATAGAAGTTATATCTTCTGGGATGCTGGGTGGTCCTAGTGGTACTTTGCAATTGATGTATGAAGAGTTGCAAGTGCTTTCTCCACTTGTTTCTACTAGAGAGTTCTACTTCTTGCGTTACTGTCAGCAAATTGAGCAAGGCTTGTGGGCAATAGTAGATGTTTCTTATGAGTTTCCTCAAGACAACCACTTTGCTCCTCAATTTCGATCTCATCGCCTTCCCTCTGGTTGCTTCATACAGGACATGCCTAATGGATATTCCAAGGTTACTTGGGTTGAACATGTAGAGATCGAAGATAAGACTCCGGTTCATCGGCTTTACCGGAATCTTATTTACAGTGGATTGGCATTTGGTGCACAAAGATGGCTTACAGTACTCCAGAGGATGTGTGAAAGATTAGCTTGCCTTATGACAGGCAATTCAACCCGGGACCTTGGTGGAGTGATTCCCACACCAGAGGGCAGGAGGAGCATGATGAGGCTTGCACAAAGGATGGTCTCCAATTTCTGCGCGAGCATTAGCACGTCACCCGGCCACCGATGGACCACCCTTTCCGGTTTGAATGAGGTTGGAGTCAGAGTCACCGTCCACAGGAGCACAGACCCTGGCCAACCTAATGGTGTGGTGCTGAGTGCTGCCACCACCATATGGCTCCCTCTCCCTCCACAAACCGTTTTCAATTTCTTCAAGGATGAAAGAGAAAGACCTCGGTGGGATGTTCTTTCCAATGGTAATGCTGTGCAAGAGGTTGCTCACATAGCAAATGGTTCACACCCTGGTAACTGCATATCCGTGCTTAGGGCTTTCAACACTAGCCAGAACAACATGCTGATACTACAAGAGTGCTGCACAGACTCTTCTAGCTCACTTGTGGTGTATTGCTCAGTTGACCTTCCATCCATCAACATAGCAATGAGTGGAGAGGACCCTTCATACATCCCCTTGGTGCCATCAGGGTTCACAATCTCACCAGACGGGCAGCATGATCAACATCAAAGTGGAGGGGATGGTGCATCAACAAGCTCAAACACGAGCAATATGGCTAGGCCTGGTGGGGGTTCACTGGTCACAATTGCATTCCAGATCCTAGTTAGCAACTTGCCATCTGCCAAGCTGAACATGGAGTCGGTGGCAACTGTTAATACACTCATCGGCACCACTGTCCAGCAAATAAAGTCTGCCTTGAATTGTCCTAGTTCCTGA 2169 0.4776 MEYGSGGSGGSPGEHHHHHHHHHNDGSSERRKKRYHRHTANQIQRLEAMFKECNHPDEKQRNQLSRELGLAPRQIKFWFQNRRTQMKAHNERADNNALRAENDKIRCENIAIREALKNVMCPSCGIPPLNEESYFDEQKLRLENAQLKEELDRVSSIAAKYIGRPISQLPPVQPIHISSLDLSMGSFGGRVLGGPSLDLDLLPGSSSAVPNVPFQPAGLSDMDKSVISDIASNAMEELLRLLQTNEPLWMKSSTDGRDVLNLETYDRMFPKANCHLKNPNVRTEASRDSGVVIMNGLTLVDMFMDPNKWMELFPTIVTVARTIEVISSGMLGGPSGTLQLMYEELQVLSPLVSTREFYFLRYCQQIEQGLWAIVDVSYEFPQDNHFAPQFRSHRLPSGCFIQDMPNGYSKVTWVEHVEIEDKTPVHRLYRNLIYSGLAFGAQRWLTVLQRMCERLACLMTGNSTRDLGGVIPTPEGRRSMMRLAQRMVSNFCASISTSPGHRWTTLSGLNEVGVRVTVHRSTDPGQPNGVVLSAATTIWLPLPPQTVFNFFKDERERPRWDVLSNGNAVQEVAHIANGSHPGNCISVLRAFNTSQNNMLILQECCTDSSSSLVVYCSVDLPSINIAMSGEDPSYIPLVPSGFTISPDGQHDQHQSGGDGASTSSNTSNMARPGGGSLVTIAFQILVSNLPSAKLNMESVATVNTLIGTTVQQIKSALNCPSS* 723
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2648 722 Pfam Homeodomain 32 87 IPR001356 GO:0003677
Dod02g2648 722 ProSitePatterns 'Homeobox' domain signature. 64 87 IPR017970 GO:0000981|GO:0006355
Dod02g2648 722 Coils Coil 88 108 - -
Dod02g2648 722 CDD START_ArGLABRA2_like 224 453 - -
Dod02g2648 722 Pfam START domain 230 454 IPR002913 GO:0008289
Dod02g2648 722 SMART START_1 229 454 IPR002913 GO:0008289
Dod02g2648 722 MobiDBLite consensus disorder prediction 14 39 - -
Dod02g2648 722 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ROC8 24 720 - -
Dod02g2648 722 SUPERFAMILY Bet v1-like 221 455 - -
Dod02g2648 722 Gene3D - 228 452 IPR023393 -
Dod02g2648 722 ProSiteProfiles START domain profile. 220 457 IPR002913 GO:0008289
Dod02g2648 722 Gene3D - 16 105 - -
Dod02g2648 722 ProSiteProfiles 'Homeobox' domain profile. 29 89 IPR001356 GO:0003677
Dod02g2648 722 SUPERFAMILY Bet v1-like 473 714 - -
Dod02g2648 722 MobiDBLite consensus disorder prediction 645 670 - -
Dod02g2648 722 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 24 720 IPR042160 -
Dod02g2648 722 MobiDBLite consensus disorder prediction 1 39 - -
Dod02g2648 722 CDD homeodomain 31 90 IPR001356 GO:0003677
Dod02g2648 722 SMART HOX_1 30 93 IPR001356 GO:0003677
Dod02g2648 722 Coils Coil 137 157 - -
Dod02g2648 722 SUPERFAMILY Homeodomain-like 11 89 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2648 Dod-Chr2 58314472 58319323 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2648 28 722 Homeobox Transcription Factor Family AT1G73360 66.193 0.0 926
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Dod02g2648 START 6.3e-49 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2648 K09338 - gmx:100809075 1192.56