Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2647 ATGGAGATGCAGGACCAAATAGAAGGCACAAAGTCTAACGGCTCTGGCGCAGCTAGTAAGTGCGATTCCAATGGTGGAACACAATCTGAGAAGGTGGTCCAATTGCGGGATTCAACTTCCATTGGAAGCAACCACACCCCCAAGGTGAGGAAACCATATACCATCACCAAACAAAGGGAGAAGTGGACAGAGGAAGAGCATCAAAAGTTCCTCGAAGCTTTGAAGTTGTATGGTCGTGGCTGGCGTCAAATTGAAGAGCATATAGGTACTAAAACTGCTGTTCAGATACGAAGCCATGCTCAGAAGTTTTTCACTAAGGTTGTGCGGGAATCTGATGGCAGTGCAGAGAGTTCTATACAACCAATTGACATACCTCCTCCTCGTCCTAAGAGGAAACCCCTTCATCCATATCCCCGTAAATCAGTTGATACTCTCAAAGGACAGTTCACCCTAAATGAGCAAGAAAGATTTCCATCGACAAACCTGCCAGCTGCCGAGAAAGGCTCCCAATCTCCAACCTCTGGGCTATCTGCACTTGGTTCGGAGGCATTGGGGTCAGCATTTTCAGAGCAGACCAACAGATGTCTTTCCCCAAACTCTTGCACAACTGAGATTCACTCGGCAAGCTTGTCACCTGTTGAAAAGGATCATGATTGCATGACATCCAACCCATCCGAGGAGGAAGACAAAGGATCTCTAGCTTCAGCCCATTTATCCACTGGTTCAAACCCACACTTGTGCATGAAGTCTGAATTTTGTCTCAAGGAAACTGAATGTTTCAATGAAGATGCTGCCAATATGCCCTGCGCCACTACTATTAAGCTTTTTGGAAGAACTGTCTCAATGGCAGGCAATCAAGAGTCGCTGAGTGTTGATGAACAGAATATGAAGCCAATTACTACCAAGTTGGATGAGGTAGATAATGTTGAGAATGAAAAGCTTGGTCAAGCATGGCCATCCGAGCAACTGGATACACAATTATCACTGGGAATGTTTATTAGTAACTTGCAAATAACACCTGATGGAGCTAAAGTGACCAGCATGGAACAGCCAAAGGAGAATCAGTGCTTTGTTGGATCTGTACCTGATGCATCTTTGCCATGGTGGAGTTTGTACCAGGGGCTTCCAGCTGTTCACTTCAACCCAGATAATCAGGTCTTAAATCCTATGCCTCTTCGTCCCTGTGTCAGAAGGAGAGAGGAAGAAAGTTCCTGCTCTGGTTCTAATGCTGAATCAGTTAGTGATGCGGACGATCAAGGTAAGTCTTCAAATGCTGTTGATTCTCGGTGTCTAAAATCTCGTGAAGAGGAGGTAGTCCCCCAGAAGTCTGCAAGGGGGTTCGTACCATATAAAAGATGTTTAACTGAAAGAGATGCTAGTTCTTTGATTGTTGAATTGGAAGAAAGGAAGGGGCAGCGAGCTCGGGTGTGCTTATAG 1437 0.4551 MEMQDQIEGTKSNGSGAASKCDSNGGTQSEKVVQLRDSTSIGSNHTPKVRKPYTITKQREKWTEEEHQKFLEALKLYGRGWRQIEEHIGTKTAVQIRSHAQKFFTKVVRESDGSAESSIQPIDIPPPRPKRKPLHPYPRKSVDTLKGQFTLNEQERFPSTNLPAAEKGSQSPTSGLSALGSEALGSAFSEQTNRCLSPNSCTTEIHSASLSPVEKDHDCMTSNPSEEEDKGSLASAHLSTGSNPHLCMKSEFCLKETECFNEDAANMPCATTIKLFGRTVSMAGNQESLSVDEQNMKPITTKLDEVDNVENEKLGQAWPSEQLDTQLSLGMFISNLQITPDGAKVTSMEQPKENQCFVGSVPDASLPWWSLYQGLPAVHFNPDNQVLNPMPLRPCVRRREEESSCSGSNAESVSDADDQGKSSNAVDSRCLKSREEEVVPQKSARGFVPYKRCLTERDASSLIVELEERKGQRARVCL* 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2647 478 Pfam Myb-like DNA-binding domain 59 102 IPR001005 -
Dod02g2647 478 Gene3D - 61 108 - -
Dod02g2647 478 MobiDBLite consensus disorder prediction 406 427 - -
Dod02g2647 478 CDD SANT 61 104 IPR001005 -
Dod02g2647 478 PANTHER SWI/SNF COMPLEX-RELATED 3 466 - -
Dod02g2647 478 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Dod02g2647 478 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Dod02g2647 478 MobiDBLite consensus disorder prediction 157 179 - -
Dod02g2647 478 MobiDBLite consensus disorder prediction 219 233 - -
Dod02g2647 478 ProSiteProfiles SANT domain profile. 57 108 IPR017884 -
Dod02g2647 478 MobiDBLite consensus disorder prediction 1 55 - -
Dod02g2647 478 MobiDBLite consensus disorder prediction 1 51 - -
Dod02g2647 478 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 57 106 IPR006447 GO:0003677
Dod02g2647 478 MobiDBLite consensus disorder prediction 401 442 - -
Dod02g2647 478 MobiDBLite consensus disorder prediction 109 142 - -
Dod02g2647 478 SUPERFAMILY Homeodomain-like 53 107 IPR009057 -
Dod02g2647 478 MobiDBLite consensus disorder prediction 207 237 - -
Dod02g2647 478 PANTHER PROTEIN REVEILLE 7-RELATED 3 466 - -
Dod02g2647 478 SMART sant 58 106 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2647 Dod-Chr2 58275464 58278267 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod02g2647 Myb_DNA-binding 1.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2647 - - gmx:778089 622.083