Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2592 ATGTCAGAAAGAATGTACCCTAGTTGGTTTTTTGGGCATACCCATTTGAAGATGGCATGGATTCAGCATCATATCCAGCAAAAAGATGGTTACTTGAGCTATCCACCACCAGTTATGCCCTCACCTTCGTCGTCATCATCATCATCATCATCAACACCATACCCTGGTGCTGCTTTCCACAAGGATTCAAATTCAATGTCTTCACCAACACCTTCATCATCATCTGGTACTAGGATTAGTCCAGCTGTTCTTTTCATTATAGTGATTCTGGCAGTACTGTTTTTCATTTCTGGCCTCCTCCACCTGCTTGTTAGATTTCTCATAAAGCACCCTTCTTCATCTGCATCTGCTCAATCCAACAGACACCAGGAGATTTCTACTTCTGATGCCCTCCAGAGGCAATTGCAACAGCTTTTCCACCTCCATGACTCTGGCTTGGATCAGGCTTTCATTGATGCACTTCCTGTTTTTCAGTACAAGGAGATTGTGGGGTTGAAGGAGCCATTTGATTGTGCTGTTTGTCTGTGTGAGTTTTCTGAGAAGGATAAGCTAAGGTTGTTACCTATGTGCAGCCATGCTTTTCACATAAGTTGTATAGACACATGGCTTCTGTCAAATTCAACTTGTCCACTTTGTAGAGGGACCCTCCTTACTGCAGGATTTTCAATTGAGAACCCAATGTTTGATTTTGATGATTTGAGGGAAGATGAGGGGTGTCCTTGCAATGTGGAAAATGGATTCACTAATAGGCAGAAAACAGTTGTGGTTGAAGAAGGTGCTGTAGAGAAAGGGGTTTTCCCAGTAAGACTTGGTAAATTCAGGAAGCTTGATGTGGAGGCTGGGGAGAATGGAGTGGGAGAGACAAGTAGCAGTAACTTGGATGCAAGAAGGTGTTACTCAATGGGATCTTACCAGTATGTGCTTGCCAATTCAGACCTCAGGATAGCCTTGAATCATGACCAGAAAGGTAGTGATTCGAGGCTTGCCAAAGGAACTGAACATGCTGAGAATGAGAAGCTTTCAGCGGAGGGGGATATGGAAGCAAAGAGGATTAGAAGTGTGAGCAAAGGTGAGAGCTTTTCTGTGTCCAAAATCTGGTTGTGGCCTAAGAAGGGAAAGTTTTCTAGTTCTTTGGAGGCTCAAATGGGCATGCCATCATATCTTAACTCAGACTTTTCTGGGATGAGGGAAGCAGAAGGGGCATGA 1206 0.4395 MSERMYPSWFFGHTHLKMAWIQHHIQQKDGYLSYPPPVMPSPSSSSSSSSSTPYPGAAFHKDSNSMSSPTPSSSSGTRISPAVLFIIVILAVLFFISGLLHLLVRFLIKHPSSSASAQSNRHQEISTSDALQRQLQQLFHLHDSGLDQAFIDALPVFQYKEIVGLKEPFDCAVCLCEFSEKDKLRLLPMCSHAFHISCIDTWLLSNSTCPLCRGTLLTAGFSIENPMFDFDDLREDEGCPCNVENGFTNRQKTVVVEEGAVEKGVFPVRLGKFRKLDVEAGENGVGETSSSNLDARRCYSMGSYQYVLANSDLRIALNHDQKGSDSRLAKGTEHAENEKLSAEGDMEAKRIRSVSKGESFSVSKIWLWPKKGKFSSSLEAQMGMPSYLNSDFSGMREAEGA* 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2592 401 Pfam Ring finger domain 170 213 IPR001841 -
Dod02g2592 401 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 146 219 IPR013083 -
Dod02g2592 401 MobiDBLite consensus disorder prediction 321 343 - -
Dod02g2592 401 CDD RING-H2_PA-TM-RING 170 213 - -
Dod02g2592 401 SMART ring_2 171 212 IPR001841 -
Dod02g2592 401 ProSiteProfiles Zinc finger RING-type profile. 171 213 IPR001841 -
Dod02g2592 401 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 11 386 - -
Dod02g2592 401 MobiDBLite consensus disorder prediction 36 76 - -
Dod02g2592 401 PANTHER RING-H2 FINGER PROTEIN ATL46-LIKE ISOFORM X1 11 386 - -
Dod02g2592 401 SUPERFAMILY RING/U-box 150 218 - -
Dod02g2592 401 MobiDBLite consensus disorder prediction 43 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2592 Dod-Chr2 57330681 57332859 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2592 68 373 C3H Transcription Factor Family AT2G18650 42.730 3.47e-61 202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2592 - - gmx:100806337 580.482