Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2572 ATGGAGATTCAGCAAAGCTTGAAGCTCATGGTCCACCGAAACCCCCACAAGAAGAAACGTGTCTACAACAACAACAACAACAACAACAACGCTGCCACCACCACCACCACAACAACAACAACAGCAACTCCAAGGCTCAAATGGAGGAATATCTTCTTCCTCCAAAGATCACCACCAATAACCAAAACCCAAACAACACCACCACCACCTCCAGAAGAGTTCATCTGCCCCATCTCCGGTTCCCTCATGGCGGACCCCGTAATAGTCTCCTCCGGCCACTCCTTCGAACGAGCCTCCGTCCTCTCCTGCAAAGATCTCAACTTCACCCCTCTCCTCTCCGACGGCACCACCCCTGATTTCTCCACCGTGATCCCTAACCTCGCCCTCAAATCCGCAATCTCCAAATGGTGTGACGCCTCCTCCACCCTCCCTCCCCAGCCCCCCCACCCGTCCCAAACCGACAACCTCGTACGCACCCTCATAATGTCCTCCTCACACCAACAACAACCAGCCACAGAAAAAGAACAGCAAGAAGAGGAACTGATCGAAGAAAGAATGGTCATGGTCCCTCCTTCTACTTCTTCCTCCTCCTCGGTGGAATCCATTGCCACTGCCACGTCAGCATCGAGCTCAACCCCACCTCCTCAACTCACAACGACACCAAGCTGCTGCAATTCCTCTTGCCCTTCTTCCTCAGAACTCGAGCCCACAACACCAGAAGCAGAAGAAATCATCTCGAAGCTTCGGAGCCCGCAAGTGTTCTTAATCGAAGAAGCGCTTCAGAATCTGAGGAAGCTCACGAGAACGAATGAGGAATCGAGGGTCATTCTCTGTAACCCTCGCATGCTCTGTTCTCTTCGAAGCCTCGTTTCTTCCAAGTACGCCACTGTGCAAGTGAACGCTATAGCTTCGGTGGTGAATCTCTCATTGGAGAAGAAGAACAAGGTGAGGATCGTGCGGTCAGGATTGGTTCCGCCGTTGATCGAAGCGCTGAGGGCGGGATCCCCTGAGGCGCAGGACCACGCTTCCGGTGCGCTCTTCAGCTTGGCGCTCGAGGACGATAACAAGACAGCAATTGGGGTCCTTGGTGCTCTTCCGCCGCTTCTCCACGCGCTCCGACTCGGGAGTGAGCGGACTCGCCATGACTCGGCCTTGGCGCTTTACCATTTGTCTATGGTTCAGAGTAACCGGGCCAAAATGGTTAAGTTCGGGTCGGTCCCGGTTTTGATTGGGATGGTTAAGTCGGGTCACATGACGGGTCGGGTTCTTTTAATTTTGGGGAATTTGGGCTGCGGGTCGGACGGGCGGGCCACAATGTTGGACGCGGGTTTGGTGGAGTGTTTGGTCGGGATGTTAAGTGGGCCTGGGTCGGGTTCTGGATCGACCCAGGAGAGCTGCGTGGCGGTGCTCTATGCATTGAGCCACGGCGGGCTTAGGTTTAAGGCGGTGGCAAAGGCGGCCGGGGTGGTTGAGGTGTTGGAGAAGGTGGAGAAGGAGGTTGGGGGCGAGAGGGCGAGGGAGAAGGTGAGGAGGATTTTGGAGATGATGAGAGGGAAGGACCCGGAAGAGGAGGATGTGGATTGGGAAGAGTTGCTTGATTCGGGTCTGGGGTGCCGGACCCAGAGCGGGCGCGATGGCGGGATGGACGGGTCAGCCACTAATTCATCCGAGTTTTGA 1677 0.5552 MEIQQSLKLMVHRNPHKKKRVYNNNNNNNNAATTTTTTTTTATPRLKWRNIFFLQRSPPITKTQTTPPPPPEEFICPISGSLMADPVIVSSGHSFERASVLSCKDLNFTPLLSDGTTPDFSTVIPNLALKSAISKWCDASSTLPPQPPHPSQTDNLVRTLIMSSSHQQQPATEKEQQEEELIEERMVMVPPSTSSSSSVESIATATSASSSTPPPQLTTTPSCCNSSCPSSSELEPTTPEAEEIISKLRSPQVFLIEEALQNLRKLTRTNEESRVILCNPRMLCSLRSLVSSKYATVQVNAIASVVNLSLEKKNKVRIVRSGLVPPLIEALRAGSPEAQDHASGALFSLALEDDNKTAIGVLGALPPLLHALRLGSERTRHDSALALYHLSMVQSNRAKMVKFGSVPVLIGMVKSGHMTGRVLLILGNLGCGSDGRATMLDAGLVECLVGMLSGPGSGSGSTQESCVAVLYALSHGGLRFKAVAKAAGVVEVLEKVEKEVGGERAREKVRRILEMMRGKDPEEEDVDWEELLDSGLGCRTQSGRDGGMDGSATNSSEF* 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2572 558 MobiDBLite consensus disorder prediction 189 237 - -
Dod02g2572 558 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 58 143 IPR013083 -
Dod02g2572 558 MobiDBLite consensus disorder prediction 21 40 - -
Dod02g2572 558 MobiDBLite consensus disorder prediction 19 40 - -
Dod02g2572 558 Pfam U-box domain 71 139 IPR003613 GO:0004842|GO:0016567
Dod02g2572 558 PANTHER U BOX DOMAIN-CONTAINING 46 542 - -
Dod02g2572 558 MobiDBLite consensus disorder prediction 537 558 - -
Dod02g2572 558 SUPERFAMILY ARM repeat 243 496 IPR016024 -
Dod02g2572 558 Coils Coil 256 276 - -
Dod02g2572 558 SMART Ubox_2 73 136 IPR003613 GO:0004842|GO:0016567
Dod02g2572 558 SUPERFAMILY RING/U-box 66 143 - -
Dod02g2572 558 ProSiteProfiles U-box domain profile. 69 143 IPR003613 GO:0004842|GO:0016567
Dod02g2572 558 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 46 542 - -
Dod02g2572 558 Gene3D - 238 517 IPR011989 -
Dod02g2572 558 CDD RING-Ubox 75 118 - -
Dod02g2572 558 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 322 359 IPR000225 GO:0005515
Dod02g2572 558 MobiDBLite consensus disorder prediction 188 241 - -
Dod02g2572 558 SMART arm_5 432 475 IPR000225 GO:0005515
Dod02g2572 558 SMART arm_5 311 351 IPR000225 GO:0005515
Dod02g2572 558 SMART arm_5 352 392 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2572 Dod-Chr2 56969250 56972227 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2572 71 558 U-box Gene Family AT5G40140 53.187 8.44e-162 470
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2572 - - lja:Lj2g3v1020040.1 589.341
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2572 02 56969250 56972227 Dod01g0021 01 315613 319616 PCT