Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2558 ATGAAGAGGGCAAGGGATGATGTTTATTCCGGCTCTCAATTCAAACGCCCCTTTACTTCCTCACGTGCTGATTCCTACGGCCAAACCCAAGGACCTGGAGGAGGAGGAGCAGGAGGTGGTATTGGTGGGGGAGGAAGTGGAGGAGCCACTACTTCCCAGAAACTGACAACCAATGATGCCTTATCCTATTTGAAGGAAGTGAAAGACATGTTTCAGGACCAACGGGAAAAATATGACATGTTCCTTGAGGTCATGAAAGATTTCAAGGCTCAAAAGACTGACACTGCTGGTGTCATAGCAAGGGTGAAGGAGCTATTCAAAGGCCACAACAATTTGATTTTTGGGTTTAACACTTTCCTGCCAAAGGGATATGAGATAACACTTGATGAGGATGAGGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAATGATGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTACCGCAAAGAGCATAAGGACATCAGTGAGGTTTATAGTGAGGTTGCTACCCTTTTCAAGGACCATCGGGATTTGCTCGATGAGTTCACTAGATTCTTACCAGATACTTCTGCGGCACCTACTACGCAGCATACTCCATATGGTCGAAATTCATTGCAGCGCTTCAATGAGCGGAGTTCTACAGCACCTATGATGCGGCAGGTGCAAGTAGACAAGGCGCAACGTTATCGGCGAGACAGGCTTCTTGCATCACATGATCGTGATCTGAGTGTTGATCGAGCTGATCTGGATGATGACAAAACAATGATAAACTTGCACAAGGAACAGAGGAAACGTGAGAGTAGAGATAGGAGAATCCGTGATCAGGACGAGAGAGAACCTGATCTTGATAATGGCAGGGATTTTAACTCACAACGCTTTTCTGACAAAAAGAAATCTGTCAAGAAGGCTGAAGGTTTTGGGATGGCTTCTGACTTTTCTATGTGTGACGACAAAGATACCTTGAAGACCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGTTCAGATGACTATCAAGCATTCTTGAAGTGTCTTCATATTTTCAGCAATGGAATAATAAAAAGGAATGACTTACAAAATTTGGTAACCGATTTACTTGGAAAGCATTCTGATCTTATGGATGAATTCAACGATTTCCTGGAGCGATGTGAAAATATTGATGGATTCCTTGCTGGTGTCATGAGTAAAAAGTCCATGTCTCCCGATGGTCATTTATCAAGATCATCAAAGTTGGAGGACAAAGACAAGGAGCAAAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAGGGAGAAATACATGTTCAAATCCATTCAAGAACTTGACCTTAGTGACTGTAAACGTTGTACTCCAAGCTACCGGCTGCTGCCTGCTGATTATCCAATCCCTACAGCTAGTCAGAGATCTGAGCTTGGTGCTCAAGTATTGAATGATCACTGGGTGTCTGTAACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAGTATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGATTTGAGATGGACATGTTATTAGAGTCTGTGAGTTCAGCTGCTAAACGTGCAGAGGAATTGTATAATAGCATCAATGAAAATAAGATCAGTGTGGAGACTCTGGGCCGTATTGAAGATCACTTTACTGCTCTAAACTTAAGGTGCATCGAACGTCTTTATGGTGACCATGGTCTTGATGTGATAGACATATTGCGTAAAAATCCGGCTCATGCTTTGCCTGTAATATTGATTCGACTGAAGCAAAAGCAGGAGGAGTGGAGTAGGTGTCGTTCAGATTTCAATAAAGTTTGGGCGGAAATTTATGCTAGAAACCACTACAAGTCACTTGATCACCGTAGTTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACAAAATCTTTGGTGGCTGAGATTAAAGAAATTAAAGAGAAGCAGCAGAAAGAGGATGATATTCTTCAGTCTATCGCTGCTGGAAATAAACAGCCTCTGATTCCACATCTTGGTTTTGAATATTCTGATGCTGGGATTCATGAAGACCTGTATAAACTAGTTCGGTATTCATGTGAAGAGCTATACTCAAGTAAAGAGTTAATGAATAAAATTATGAGGCTCTGGAGTAACTTCTTGGAACCAATGCTTGGTGTTCCTTCCCGATCTCACGGGACAGAAAAGGTGGAAGAGAGGAAAGCAGGGCATAATGTTCGCAATCCAAATATTGTGGGTGATGGAGGCCATCATGGAGACTCTACTTCAATAAGTTCAAAAGTACCAAAATCTGATAAGAGTGAAGCTGATGGTAGAGCACCTGAAATAAAGAATGTACACAGGTCTAGTATAGCAGTGAATGATAAAGAAAATGGATCTGTTGGTGGTGAACATGTCTCTAGAGATGATCCCCTAATGGATAAAGGGCAGAAAAATATAGAATGCAGTGATAAAGTCCCTGGGTGTAGTAAACAATTGGCCTCTGATGAACAAGGAGCTAAAAACAATGCATCAATGGCAATTAGAGGTGAAAATAGCCTCAGCAGAACCAACTTAGAATTGACTCCAGGCTCTATCCCAACTCCATCCAGACCCACTGATGCTGAGGATTCTGTTGCTAAGCCTCAGAGTATTAATGCACCTTCGGTGGAGGGATGTGATACCACAGCTCCAGCTCCAGTGGCCAATGGAGTGCTAATTGACAGCAGTAAAGTTAGAAGCCATGAAGAATCTGCTGGGCCTGGCAAAATTGAAAAGGAAGAGGGTGAATTATCACCAAACGGTGATTCGGAGGAGGATAACTTTGTTGCTTTTGGAGATTCAAATGCGCAGTCAATGGCCAAGTCAAAGCACAATATTGAAAGAAGAAAGTATCAGTCTAGAAATGGAGAGGATGAATGCCGTCCAGAAGCTGGAGGTGATAATGATGCAGATGCTGATGACGAGGACAGTGAGAATGTTTCTGAGGCTGGTGAAGATGTCTCAGGCAGTGAGTCTGCTGGTGATGAATGCTTCCGGGAAGATCATGAGGAGGAGGAAGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGTGAAGGTGAAGCTGAGGGGATGTGTGATGCACAATCTGCTGGAGGAGATGGTTCATCATTGCCATTGTCAGATAGGTTCCTTTCATCTGTGAAACCTCTTACCAAGCATGTATCAGCAGTTTCATATGTTGAAGATATGAAGGATTCCAGGGTGTTTTATGGAAATGATGATTTCTATGCACTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTGTCAGCAAAAACCAATGCAATGAGTTCAGAAATGAGATGGAAAGCAAAGGATGCCAGTTCACCAGATCCTTATTCAAAGTTTATGGATGCGCTTTACAATCTGCTTGATGGTTCTTTCGAGAATGCCAAGTTTGAAGATGAATGCAGATCGATTATTGGGAACCAATCATATGTGTTATTCACACTGGACAAGTTAATATATAAATTGGTCAGACATCTTCAAAATGTTGCAACTGATGAGGTAGACAATAAGCTTCTCCAATTGTCTGAGTATGAAAAATCGCGGAAACCTGGGAAAATAAATGATTCAATATATCATGCGAATGCACATGTCATCCTTCATGAGGAGAATATATATCGTCTGCAATGTTACTCTACTCCCTCTCGACTATCTATCCAGCTGATGGACAACATGAATGAAAAGCCTGAGGTGTTCGCTGTTTCTATTGATCCGAATTTTTCTTTTTACCTGTACAATGATTTCCTGTCTGTCTATCCTGGCAAAAAGGAACCCCATGGCATTATACTGCAAAGAAACAAACGCAAATATGGAGGCTTAGATGAGCTCGCTGCAATAAGCTCTGCCATGGAAGGTGTTAAAGTAATTAATGGATTGGAATGTAAGATAGCTTGCAACTCATCCAAGATCTCCTATGTTCTGGACACGCAAGATTTCTTCTTCCGGCCTAAAAGGAGAAGGCAAGCATCATCAGGGACAGCATCTTGCCGGCACCATCGGGATAGAGAGGAAAGATACCGCAGATTGATGGCAGCCTCGCAATGA 4164 0.4181 MKRARDDVYSGSQFKRPFTSSRADSYGQTQGPGGGGAGGGIGGGGSGGATTSQKLTTNDALSYLKEVKDMFQDQREKYDMFLEVMKDFKAQKTDTAGVIARVKELFKGHNNLIFGFNTFLPKGYEITLDEDEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDISEVYSEVATLFKDHRDLLDEFTRFLPDTSAAPTTQHTPYGRNSLQRFNERSSTAPMMRQVQVDKAQRYRRDRLLASHDRDLSVDRADLDDDKTMINLHKEQRKRESRDRRIRDQDEREPDLDNGRDFNSQRFSDKKKSVKKAEGFGMASDFSMCDDKDTLKTMYSQAFSFCEKVKEKLSSSDDYQAFLKCLHIFSNGIIKRNDLQNLVTDLLGKHSDLMDEFNDFLERCENIDGFLAGVMSKKSMSPDGHLSRSSKLEDKDKEQKREMDGAKEKERYREKYMFKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFEMDMLLESVSSAAKRAEELYNSINENKISVETLGRIEDHFTALNLRCIERLYGDHGLDVIDILRKNPAHALPVILIRLKQKQEEWSRCRSDFNKVWAEIYARNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDILQSIAAGNKQPLIPHLGFEYSDAGIHEDLYKLVRYSCEELYSSKELMNKIMRLWSNFLEPMLGVPSRSHGTEKVEERKAGHNVRNPNIVGDGGHHGDSTSISSKVPKSDKSEADGRAPEIKNVHRSSIAVNDKENGSVGGEHVSRDDPLMDKGQKNIECSDKVPGCSKQLASDEQGAKNNASMAIRGENSLSRTNLELTPGSIPTPSRPTDAEDSVAKPQSINAPSVEGCDTTAPAPVANGVLIDSSKVRSHEESAGPGKIEKEEGELSPNGDSEEDNFVAFGDSNAQSMAKSKHNIERRKYQSRNGEDECRPEAGGDNDADADDEDSENVSEAGEDVSGSESAGDECFREDHEEEEDIEHDDVDGKAESEGEAEGMCDAQSAGGDGSSLPLSDRFLSSVKPLTKHVSAVSYVEDMKDSRVFYGNDDFYALFRLHQILYERILSAKTNAMSSEMRWKAKDASSPDPYSKFMDALYNLLDGSFENAKFEDECRSIIGNQSYVLFTLDKLIYKLVRHLQNVATDEVDNKLLQLSEYEKSRKPGKINDSIYHANAHVILHEENIYRLQCYSTPSRLSIQLMDNMNEKPEVFAVSIDPNFSFYLYNDFLSVYPGKKEPHGIILQRNKRKYGGLDELAAISSAMEGVKVINGLECKIACNSSKISYVLDTQDFFFRPKRRRQASSGTASCRHHRDREERYRRLMAASQ* 1388
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2558 1387 SMART hdac_interact2seq4b 472 572 IPR013194 -
Dod02g2558 1387 MobiDBLite consensus disorder prediction 1 52 - -
Dod02g2558 1387 Gene3D Paired amphipathic helix 59 121 IPR036600 GO:0006355
Dod02g2558 1387 MobiDBLite consensus disorder prediction 13 28 - -
Dod02g2558 1387 Gene3D Paired amphipathic helix 136 208 IPR036600 GO:0006355
Dod02g2558 1387 MobiDBLite consensus disorder prediction 822 842 - -
Dod02g2558 1387 Coils Coil 545 565 - -
Dod02g2558 1387 MobiDBLite consensus disorder prediction 856 912 - -
Dod02g2558 1387 MobiDBLite consensus disorder prediction 1003 1017 - -
Dod02g2558 1387 Pfam Sin3 family co-repressor 474 566 IPR013194 -
Dod02g2558 1387 Coils Coil 433 453 - -
Dod02g2558 1387 MobiDBLite consensus disorder prediction 931 952 - -
Dod02g2558 1387 MobiDBLite consensus disorder prediction 1033 1048 - -
Dod02g2558 1387 MobiDBLite consensus disorder prediction 431 452 - -
Dod02g2558 1387 Gene3D Paired amphipathic helix 337 410 IPR036600 GO:0006355
Dod02g2558 1387 ProSiteProfiles PAH domain profile. 53 123 IPR003822 GO:0006355
Dod02g2558 1387 MobiDBLite consensus disorder prediction 750 1074 - -
Dod02g2558 1387 PANTHER PAIRED AMPHIPATHIC HELIX PROTEIN SIN3-LIKE 2 ISOFORM X1 1 1376 - -
Dod02g2558 1387 Pfam C-terminal domain of Sin3a protein 1106 1353 IPR031693 -
Dod02g2558 1387 SUPERFAMILY PAH2 domain 134 206 IPR036600 GO:0006355
Dod02g2558 1387 SUPERFAMILY PAH2 domain 341 408 IPR036600 GO:0006355
Dod02g2558 1387 MobiDBLite consensus disorder prediction 977 1002 - -
Dod02g2558 1387 ProSiteProfiles PAH domain profile. 339 408 IPR003822 GO:0006355
Dod02g2558 1387 Pfam Paired amphipathic helix repeat 160 204 IPR003822 GO:0006355
Dod02g2558 1387 Pfam Paired amphipathic helix repeat 76 120 IPR003822 GO:0006355
Dod02g2558 1387 Pfam Paired amphipathic helix repeat 361 405 IPR003822 GO:0006355
Dod02g2558 1387 PANTHER SIN3B-RELATED 1 1376 IPR039774 GO:0003714
Dod02g2558 1387 SUPERFAMILY PAH2 domain 51 122 IPR036600 GO:0006355
Dod02g2558 1387 ProSiteProfiles PAH domain profile. 137 207 IPR003822 GO:0006355
Dod02g2558 1387 MobiDBLite consensus disorder prediction 791 805 - -
Dod02g2558 1387 MobiDBLite consensus disorder prediction 276 314 - -
Dod02g2558 1387 MobiDBLite consensus disorder prediction 422 452 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2558 Dod-Chr2 56564083 56585766 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2558 42 156 WRKY Transcription Factor Family AT4G12020 50.862 2.41e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Dod02g2558 Sin3a_C 2.9e-53 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2558 K11644 - gmx:100807181 2277.29