Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2557 ATGGATGTGGATCACAACAACAGTGTTGCCACGGTTAAAACGAAGAAGAAGAAGAATGGTTCCTTAAGTTCCATTTTCAAGCATGCAGATACACAAGACTGGTTTTTCATGGTCTTTGGCTTGTTGGGGGCCATTGGTGATGGCTTAGGCACCCCTATGGTGTTGTTTGTCACTAGCAGGATCATGAACAACTTTGGCAGTTTTAAGAACTCCACAGGTGGTTTTACTCATAACATCAACCAGAATGCAGTGGCTTTGTTATATGTGGCTTGCGGGTCTTTTGTTGCTTGTTTCCTGGAGGGTTATTGTTGGACAAGAACAGGTGCAAGACAAGCTGCAAGAATGAGAGCCAGGTATTTAAAGGCGGTTTTAAGACAGGAAGTAGCATACTTTGATTTGCATGTCACAAGCACTTCAGAGGTCATCACCAGTGTCTCCAATGATAGCCTCGTAATTCAAGATTGTCTTAGTGAGAAGGTTCCAAATTTCTTGATGAATTCCTGCATGTTTATTGGGAGCTACATAGTGGCTTTTGCTTTGTTATGGAGATTGGCCATTGTGGGGTTCCCTTTTATAGTCTTTCTTGTGATCCCTGGTTTGATGTATGGGAGGACTTTGATGGGGTTGGCCAGAAAGATCAGAGAAGAGTATAATCAGGCTGGTACAATAGCAGAACAAGCAATATCTTCCATCAGAACCGTTTATTCCTTTGTGGGGGAAAGCAAGACCATAGCAGCTTTCTCCGATGCTTTACAAGGTTCTGTTAAGTTGGGCCTAAAGCAAGGCTTGGCTAAAGGCTTAGCAATTGGAAGTAATGGTGTTGTCTTTGCTATTTGGTCCTTCATGTCATATTATGGTAGCAGATTGGTCATGTACCATGGTGCTCATGGTGGGACTGTATTTGCAGTTGGAGCAGCCGTAGCTCTTGGTGGATTAGCACTAGGTGCTGGTTTGTCCAATGTTAAGTACTTTTCAGAAGCAAGTGCCGCTGGGGAACGCATCATGGAGGTTATAAAAAGAGTTCCAAAGATTGATTCTGACAACATGGCTGGTGAGATACTGGAGAACGTCTCAGGGGAAGTAGAATTTGACCATGTGCAATTTACATACCCTTCAAGGCCAGACAGCATCATATTGAATGATTTTTGCCTCAAGGTCCCAGCAGGGAAGACAGTGGCCTTGGTTGGTGGGAGTGGCTCAGGGAAATCCACAGTGATATCACTGTTGCAAAGGTTTTATGACCCTATTGGTGGTGAGATAAGGCTTGATGGTGTGGCCATTCAGAAGCTTCAGCTCAAGTGGCTAAGGTCTCAGATGGGTTTGGTTAGCCAAGAGCCTGCTCTATTTGCAACAAGCATTAAGGAGAACATACTTTTTGGAAGGGAAGATGCTTCAGAGGAAGAGATTTTGGAGGCTGCAAAAGCCTCCAATGCTCATAATTTCATTTCACAGTTGCCACAAGGATATGATACACAGGTTGGAGAGAGAGGAGTTCAAATGTCAGGGGGACAAAAACAAAGGATTGCCATTGCACGAGCAATAATAAAGAAACCCCAAATCCTACTTCTAGATGAAGCAACAAGTGCCCTAGACTCCGAGTCCGAGCGAGTTGTCCAAGAAGCTCTCGACAAAGCTGCAATAGGAAGGACCACCCTCATTATCGCTCACCGCTTGTCGACCATCCGAAATGCAGACATCATTGCCGTCGTTCAGAATGGCAAAGTCATGGAAATGGGGTCACATCAACACCTCATCCAAGATGAAAACGGCCTCTACGCTTCCCTTGTTCGCCTTCAACAAACAGAGAAAGCAAAGAACGACCAAGAAGAACAAACACTTGCTTATCCTTCATCATCAATTTTAAATAAGGACATACATAGCACAAGTAGTCGTAGACTCTCACTTGTGAGTCGTTCTAGCTCAGCAAACTCAATAGCATGTGTTTCACGTGGCGGTGATGATGATGATGATGATGCTGCAAAGGTCATAGAAGATAATAAGAATTTACTGCCTATTCCCTCTTTTCGAAGGTTGTTAGCTTTGAACCTTCCAGAGTGTAAACAAGCATGTTTGGGGTGTTTCGGTGCGGTTCTATTTGGTGCGGTTCAACCAATTTATGCATTCTCGATGGGGTCCATGATCTCAGTTTATTTTCTAACCGACCATGATGAGATAAAGAGGAAAACTAGGATCTACGCGCTTTGTTTCCTGGGGCTGGCTGTGTTCTCAATGATTGTGAATCTGTTGCAACATTATAATTTTGCTTATATGGGAGAGTACTTGACAAAGAGGATTAGAGAAAGGATGCTTTCGAAAATACTGACTTTTGAAGTTGGATGGTTCGATCAAGATGAGAATTCCACAGGTGCTGTTTGCTCTCGACTTGCAAAAGAAGCCAATGTGGTAAGGTCTTTAGTGGGAGACAGAATGGCTCTTGTGGTGCAAACTTTCTCTGCAGTGGGAATAGCCTTTACCATGGGCTTGATAATTGCATGGAGGCTTGCTATTGTTATGATAGCTGTTCAACCTATTATCATTGCTTGCTTCTATACAAGGCGTGTCCTCCTACAAAGTATGTCCAAGAAGGCTATCAAGGCACAAGGCGAAAGTAGCAAGATAGCTGCTGAAGCTGTTTCCAATCTTAGAACAATTACTGCCTTCTCTTCCCAAGACCGGATCCTCAAAATGCTTGAAAAATCCCAAGAAGGCCCAAGTCGTGAGAGCACTAGACAATCTTGGTTTGCAGGCATTGGCCTTGCATGTTCCCAAAGCCTCACATCTTGCACATGGGCTTTGGACTTTTGGTATGGTGGTAAGCTAGTAGCACATGGCTATATTGCAGCTAATGCATTGTTTGAGACATTCATGATCATTGTGAGCACAGGTAGAGTCATTGCAGATGCTGGTAGCATGACTAGTGACCTTGCCAAAGGAGCAGATGCTGTTGGCTCAGTTTTTGCAATCCTAGATAGGTACACAAAAATTGAGCCTGATGACATGGATGGATACAAGCCTGAAAAGTTAACAGGCCACATAGAACTCCATGATATCCATTTTGCTTATCCAGCTAGGCCCAATTTAATGATTTTCCAAGGATTCTCAATCAAAATTGATGCAGGTAAATCAACAGCATTGGTAGGACAAAGTGGATCTGGAAAATCAACAATAATTGGCTTAATAGAGAGATTCTATGATCCAATCAAAGGGACAATAACTATAGATGGAAGAGACATAAAGTCATATCACCTTAGGTCATTGAGGAATCATATTGCCCTTGTAAGCCAAGAGCCAACACTATTTGGTGGGACCATAAGGGAGAACATTGCCTATGGAGCTTCTGATAATAAGGTTAGTGAAAATGAGATCATAGAGGCAGCAAGAGCTGCTAATGCTCATGAATTCATTGCAAGCTTGAAAGATGGTTACGACACATATTGTGGGGATAGAGGAGTTCAACTCTCTGGGGGTCAAAAGCAAAGGATTGCAATAGCCAGAGCCATACTAAAGAATCCAGAAGTTTTGCTATTGGATGAGGCCACTAGTGCTCTTGATAGCCAGTCAGAGAAGCTAGTGCAGGGTGCTTTGGAGAGAGTTATGGTTGGGAGGACTAGTGTGGTGGTGGCTCATAGGTTGAGCACCATACAAAATTGTGATATGATTGCAGTGTTGGATAAGGGAAGGGTGGTAGAAAAAGGGACTCACTCATCTTTATTGGCTAGGGGACCAAACGGAGCTTATTACTCTCTTGTGAGTTTGCAAAGAAGGCCAACCAACTCTGCTGCTGACTCTGCACTTAAAATGAGCTAA 3807 0.4345 MDVDHNNSVATVKTKKKKNGSLSSIFKHADTQDWFFMVFGLLGAIGDGLGTPMVLFVTSRIMNNFGSFKNSTGGFTHNINQNAVALLYVACGSFVACFLEGYCWTRTGARQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDCLSEKVPNFLMNSCMFIGSYIVAFALLWRLAIVGFPFIVFLVIPGLMYGRTLMGLARKIREEYNQAGTIAEQAISSIRTVYSFVGESKTIAAFSDALQGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSRLVMYHGAHGGTVFAVGAAVALGGLALGAGLSNVKYFSEASAAGERIMEVIKRVPKIDSDNMAGEILENVSGEVEFDHVQFTYPSRPDSIILNDFCLKVPAGKTVALVGGSGSGKSTVISLLQRFYDPIGGEIRLDGVAIQKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDASEEEILEAAKASNAHNFISQLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKKPQILLLDEATSALDSESERVVQEALDKAAIGRTTLIIAHRLSTIRNADIIAVVQNGKVMEMGSHQHLIQDENGLYASLVRLQQTEKAKNDQEEQTLAYPSSSILNKDIHSTSSRRLSLVSRSSSANSIACVSRGGDDDDDDAAKVIEDNKNLLPIPSFRRLLALNLPECKQACLGCFGAVLFGAVQPIYAFSMGSMISVYFLTDHDEIKRKTRIYALCFLGLAVFSMIVNLLQHYNFAYMGEYLTKRIRERMLSKILTFEVGWFDQDENSTGAVCSRLAKEANVVRSLVGDRMALVVQTFSAVGIAFTMGLIIAWRLAIVMIAVQPIIIACFYTRRVLLQSMSKKAIKAQGESSKIAAEAVSNLRTITAFSSQDRILKMLEKSQEGPSRESTRQSWFAGIGLACSQSLTSCTWALDFWYGGKLVAHGYIAANALFETFMIIVSTGRVIADAGSMTSDLAKGADAVGSVFAILDRYTKIEPDDMDGYKPEKLTGHIELHDIHFAYPARPNLMIFQGFSIKIDAGKSTALVGQSGSGKSTIIGLIERFYDPIKGTITIDGRDIKSYHLRSLRNHIALVSQEPTLFGGTIRENIAYGASDNKVSENEIIEAARAANAHEFIASLKDGYDTYCGDRGVQLSGGQKQRIAIARAILKNPEVLLLDEATSALDSQSEKLVQGALERVMVGRTSVVVAHRLSTIQNCDMIAVLDKGRVVEKGTHSSLLARGPNGAYYSLVSLQRRPTNSAADSALKMS* 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2557 1268 Gene3D - 1002 1262 IPR027417 -
Dod02g2557 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 326 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod02g2557 1268 SMART AAA_5 388 574 IPR003593 -
Dod02g2557 1268 SMART AAA_5 1039 1233 IPR003593 -
Dod02g2557 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 361 597 IPR003439 GO:0005524
Dod02g2557 1268 CDD ABC_MTABC3_MDL1_MDL2 361 599 - -
Dod02g2557 1268 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 23 1258 IPR039421 -
Dod02g2557 1268 Gene3D ABC transporter type 1, transmembrane domain 85 986 IPR036640 GO:0005524|GO:0016021
Dod02g2557 1268 CDD ABC_MTABC3_MDL1_MDL2 1012 1253 - -
Dod02g2557 1268 CDD ABC_6TM_Pgp_ABCB1_D2_like 679 995 - -
Dod02g2557 1268 Pfam ABC transporter 379 528 IPR003439 GO:0005524
Dod02g2557 1268 Gene3D - 359 612 IPR027417 -
Dod02g2557 1268 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1012 1250 IPR003439 GO:0005524
Dod02g2557 1268 ProSitePatterns ABC transporters family signature. 1153 1167 IPR017871 GO:0005524
Dod02g2557 1268 ProSitePatterns ABC transporters family signature. 500 514 IPR017871 GO:0005524
Dod02g2557 1268 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 23 1258 - -
Dod02g2557 1268 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 691 977 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod02g2557 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1003 1253 IPR027417 -
Dod02g2557 1268 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 354 599 IPR027417 -
Dod02g2557 1268 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 334 - -
Dod02g2557 1268 Pfam ABC transporter 1031 1181 IPR003439 GO:0005524
Dod02g2557 1268 SUPERFAMILY ABC transporter transmembrane region 671 996 IPR036640 GO:0005524|GO:0016021
Dod02g2557 1268 SUPERFAMILY ABC transporter transmembrane region 25 345 IPR036640 GO:0005524|GO:0016021
Dod02g2557 1268 Pfam ABC transporter transmembrane region 690 960 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Dod02g2557 1268 Pfam ABC transporter transmembrane region 38 299 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2557 Dod-Chr2 56544505 56553949 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2557 691 1268 Calmodulin-binding Proteins AT2G36910 37.241 7.71e-113 382
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2557 K05658 - gmx:100807709 2004.56