Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2544 ATGTGTTTTGCAGGGCTCAACAGGTGTGGTAAGAGCTGCAGGCTAAGATGGACCAACTACCTAAGACCTGACCTAAAGCATGACAGTTTTACTCCCCAAGAAGAAGAGCTCATTATTAACCTTCATGCAGCTATAGGAAGCAGATGGTCTTTAATTGCGAAACGACTTCCTGGAAGAACAGACAATGATGTCAAGAACTACTGGAACACAAAGCTGAGGAAGAAGCTGATGAAGATGGGAATTGATCCAGTAACACACAAGCCAGTGACACAGGTCCTTTCTGACTTGGGGAGCATTAGTGGCATCCCAAACACAAGCAATAACCAAATAGGCTTTGTCAACAAGGACTTGATGAGCAACATGTTACAAACCAGAACTGAACCACCTGCATCACTAACAAACAATTCAGGTGCCAAGAAAAATCCAATGGTGGAGCATGCACAAGAGGAACAAGTCCATTCCTGGGAACACCAGGTTCAGTACCAAGTCATGAACCCTGAGAATGTTCAACCACATGTATTCAGTGAAGCTGCATCCTCAAGTTCATCATCATCTTCCTCTAATCTCACACAATTAAGCTCACCACAGTCCTATTCTTGCCAAACTCCACAGGCACAGATCATCCCTCCTTGTTCTTCCTTCGATTGGAGTGAGTTTCTTCACAGTGAACCTTTTATTTGGTCAGAATTTCAGCAGCTTCAACAATGTGACCTTCAGAGGGCTGTGTCATCATTGAAGCCCTCAGGTCTAATAATGCAAAGTGAAGGTGAACTTTCCAATAACAATGCCAACAGAAATGACCATGACAAACAAGGTGCTACAAGTGAGGTATCTGGGGATAAGGCTTGTGATGCAGTCATGGGGTGTGAGAACAAGCAATGTGATGGTCATTCAGCTTCAGGGAATTCATTTGTGGATGGTATTTTGGACAGGGATATTGAGATAAGGGAAGCTTTCCCTGAACTTCTGGATGCTTCTTTTGATTACTAA 990 0.4354 MCFAGLNRCGKSCRLRWTNYLRPDLKHDSFTPQEEELIINLHAAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVTQVLSDLGSISGIPNTSNNQIGFVNKDLMSNMLQTRTEPPASLTNNSGAKKNPMVEHAQEEQVHSWEHQVQYQVMNPENVQPHVFSEAASSSSSSSSSNLTQLSSPQSYSCQTPQAQIIPPCSSFDWSEFLHSEPFIWSEFQQLQQCDLQRAVSSLKPSGLIMQSEGELSNNNANRNDHDKQGATSEVSGDKACDAVMGCENKQCDGHSASGNSFVDGILDRDIEIREAFPELLDASFDY* 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2544 329 Pfam Myb-like DNA-binding domain 29 70 IPR001005 -
Dod02g2544 329 SUPERFAMILY Homeodomain-like 7 81 IPR009057 -
Dod02g2544 329 CDD SANT 29 72 IPR001005 -
Dod02g2544 329 MobiDBLite consensus disorder prediction 126 141 - -
Dod02g2544 329 Gene3D - 3 26 - -
Dod02g2544 329 MobiDBLite consensus disorder prediction 126 151 - -
Dod02g2544 329 PANTHER F14D16.11-RELATED 4 329 - -
Dod02g2544 329 MobiDBLite consensus disorder prediction 174 197 - -
Dod02g2544 329 ProSiteProfiles Myb-like domain profile. 22 72 IPR001005 -
Dod02g2544 329 SMART sant 26 74 IPR001005 -
Dod02g2544 329 MobiDBLite consensus disorder prediction 256 277 - -
Dod02g2544 329 Gene3D - 29 91 - -
Dod02g2544 329 PANTHER F14D16.11-RELATED 4 329 - -
Dod02g2544 329 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 22 76 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2544 Dod-Chr2 56383486 56385249 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2544 4 329 MYB Transcription Factor Family AT3G28470 43.675 1.43e-54 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Dod02g2544 Myb_DNA-binding 5.9e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2544 K09422 - gmx:100815077 427.172
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2544 02 56383486 56385249 Dod02g2544 02 56383486 56385249 ECH