Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2520 ATGACAATCAAGGGAGGATCAAACAAGGCGTGTGCTGCTTGCAAATACCAAAGAAGAAGGTGTTCTAAGGATTGCCCTCTAGCTCCCTATTTCCCCTCCGATAAACCCAAAACATTCAGCAACGCTCATCGTTTGTTTGGTGTTCGCAACATGTTGACAATACTCAAGCAAGTCCAACCAGACGAAAGGGACGAGGCCATGAAGTCCATTATCTTTGAGTCTGATATGCGTGCAAGGTACCCAATTGATGGGTGTTACGGTGTTATGGTTCACTATCAGCATCTTATATCTAATGCACTTAAAGAGTTGCAACATGTGCAAACTTTGCTTGCTCATTTTAGGCAACAAAACCAACAACAGCATCATCCTTTGTCTCTTTTTCCATCGGATAACTGCTCGATCTTGCCGACAAATGGTGAAGCGTTTCCATCATATAACCACGGTGAACCTTGTTTTGTTCATGGTCAAGTAGAATGTGGTTGTGGCCTTAACATTGAAAGTAAGGATAACTGGATGAATGATTATCCTTATAACAATGACATGATGACTAATGTTGGTGTCAAATTCAATTCGTTGTCAATGCATGAACAATCTCATCAAGAATTAAACAGTATTCCTTCTGCCATTGTCGCTAATGTTAATACAAATGTCATGGATGCAAAATCTTCTGAGATTACATCGTGGGCAGTGCAAGGTCATTCCGTCTACGATGATGTATCCTTTGATGAAGTTGATAATGATGATCAACCATTGATTGAATGCAAGAAGGATCCCAGTAGAGGTATGGATATATATTTTCCTTTCACATTCTTCTTGTTTTAA 822 0.3978 MTIKGGSNKACAACKYQRRRCSKDCPLAPYFPSDKPKTFSNAHRLFGVRNMLTILKQVQPDERDEAMKSIIFESDMRARYPIDGCYGVMVHYQHLISNALKELQHVQTLLAHFRQQNQQQHHPLSLFPSDNCSILPTNGEAFPSYNHGEPCFVHGQVECGCGLNIESKDNWMNDYPYNNDMMTNVGVKFNSLSMHEQSHQELNSIPSAIVANVNTNVMDAKSSEITSWAVQGHSVYDDVSFDEVDNDDQPLIECKKDPSRGMDIYFPFTFFLF* 274
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2520 273 Pfam Lateral organ boundaries (LOB) domain 10 107 IPR004883 -
Dod02g2520 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 7 202 - -
Dod02g2520 273 ProSiteProfiles LOB domain profile. 9 110 IPR004883 -
Dod02g2520 273 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 7 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2520 Dod-Chr2 55637911 55638732 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2520 1 114 AS2 family AT3G47870 55.263 4.09e-41 142
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Dod02g2520 LOB 4.7e-35 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1692 05 42228753 42233877 Dod02g2520 02 55637911 55638732 ECH
Dod02g2520 02 55637911 55638732 Dod02g2520 02 55637911 55638732 ECH