Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2510 ATGAGCATGGGAGAAATAATGGTTGGAAGTTCAACTAAGGTTGCATTTTTCCTTTTGGTTGCTTTCGCCATTACTATTCCATGCCTTGAGGCTGGCATTGCTAAGTTTGACGATTATCTCAAAGCCCAGGCTGACAGGGCTCATCAAATTGCCCTCCAATCCTATGTGCCGGACCCTGAAGGTGTTGCACACGAAATCACTACGCAAGTTTCTATGCTCTTGGCAAACACCACAAGGAGGGAGCTAATGCAAAAGAAAAAGTATAAGGGACCATGTCAGGCCACCAACCCCATTGACAGCTGCTGGAGGTGCAACAAAAATTGGGCCGACGATCGCTACCAGTTGGCCAGATGCGGCAAGGGATTCGGAAGGAGAGCCGTCGGAGGCCTCGGTGGTCCAATCTACGTCGTCACCGACAGTTCGGATGACGACATGCTTAACCCTAAACCCGGAACCCTACGCCACGCTGTCATCCAAAACGGCCCATTGTGGATCACTTTCGCCCGCAACATGATCATCAACTTGAAGCAAGAGTTGATGGTCAACTCCAACAAGACCATTGATGGTCGTGGAGCCAATGTGGTTATTAGGGATGGTGGTGGCATCACCTTGCAGTTCGTGGACAACATCATCATCCACGGGCTTCGCATCAAGAACACCAAGTCCAAGGAAGGTGGCATGATAAGGGACTCAGTGGACCATGCTGGACTAAGGACAAGGAGTGATGGTGATGCCATCTCCCTCTTCGGGGCCTCCAACGTTTGGATCGACCATGTTTCTATGTCTGAGGGCGCTGATGGTCTCGTTGATGTTATCCAGGGTTCCACTGCCATCACCATCTCCAATTGTCACATGACCAAACACAATGATGTTATGTTGTTCGGAGCTAGTGATAGCTACAGTGGGGACAAGATCATGCAGATCACAGTTGCATTCAACCACTTCGGGCAAGGACTAATTCAGAGGATGCCTAGGTGCAGGTGGGGTTTCTTCCACGTCGTGAACAACGACTACACTCACTGGCAGATGTATGCCATCGGCGGTAGCTCTAACCCAACCATTCTGAGCCAGGGGAACCGCTTCATCGCCCCCCCCAACAACGCCGCCAAGGAGATCACTCACAGAGACTATGCCAAGCCTGAGGAGTGGAGCAAGTGGCAGTGGAGATCTGAGATGGACTTGTACATGAATGGTGCCAAGTTTGTTCAGTCTGGGCCACCCATTGGGAAGTTGCCATTCAAGAAGGGATACCTCATGAAGCCAAGAGATGGGTATGCTGCTAGCAGGCTCACAAGGTTTGCTGGTGCCCTTTCTTGCTTTGTGGGCAGGCCTTGCTAG 1338 0.512 MSMGEIMVGSSTKVAFFLLVAFAITIPCLEAGIAKFDDYLKAQADRAHQIALQSYVPDPEGVAHEITTQVSMLLANTTRRELMQKKKYKGPCQATNPIDSCWRCNKNWADDRYQLARCGKGFGRRAVGGLGGPIYVVTDSSDDDMLNPKPGTLRHAVIQNGPLWITFARNMIINLKQELMVNSNKTIDGRGANVVIRDGGGITLQFVDNIIIHGLRIKNTKSKEGGMIRDSVDHAGLRTRSDGDAISLFGASNVWIDHVSMSEGADGLVDVIQGSTAITISNCHMTKHNDVMLFGASDSYSGDKIMQITVAFNHFGQGLIQRMPRCRWGFFHVVNNDYTHWQMYAIGGSSNPTILSQGNRFIAPPNNAAKEITHRDYAKPEEWSKWQWRSEMDLYMNGAKFVQSGPPIGKLPFKKGYLMKPRDGYAASRLTRFAGALSCFVGRPC* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2510 445 PANTHER PECTATE LYASE 11 445 - -
Dod02g2510 445 PANTHER PECTATE LYASE 18-RELATED 11 445 IPR045032 GO:0030570
Dod02g2510 445 SMART amb_all 170 367 IPR002022 -
Dod02g2510 445 SUPERFAMILY Pectin lyase-like 86 439 IPR011050 -
Dod02g2510 445 PRINTS Pollen allergen Amb family signature 142 167 IPR018082 -
Dod02g2510 445 PRINTS Pollen allergen Amb family signature 242 263 IPR018082 -
Dod02g2510 445 PRINTS Pollen allergen Amb family signature 416 439 IPR018082 -
Dod02g2510 445 PRINTS Pollen allergen Amb family signature 178 194 IPR018082 -
Dod02g2510 445 PRINTS Pollen allergen Amb family signature 344 363 IPR018082 -
Dod02g2510 445 PRINTS Pollen allergen Amb family signature 118 135 IPR018082 -
Dod02g2510 445 PRINTS Pollen allergen Amb family signature 322 341 IPR018082 -
Dod02g2510 445 PRINTS Pollen allergen Amb family signature 386 410 IPR018082 -
Dod02g2510 445 Gene3D - 95 438 IPR012334 -
Dod02g2510 445 Pfam Pectate lyase 176 361 IPR002022 -
Dod02g2510 445 Pfam Pectate lyase, N terminus 33 82 IPR007524 GO:0030570
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2510 Dod-Chr2 55419777 55422121 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2510 12 445 Polysaccharide Lyase AT5G15110 53.846 0.0 514
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2510 K01728 - gmx:100785801 701.049
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1712 05 42476247 42478521 Dod02g2510 02 55419777 55422121 ECH
Dod02g2510 02 55419777 55422121 Dod02g2510 02 55419777 55422121 ECH