LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Dod02g2506	ATGGTGATAAAGAGTGAAGAGAACATGAAAAGGAGCTGGATGGTGTCCGTGCCAGCAAGTGAGTTCCTAGTAGCTAGGGGTGCAAAGAGAAGACGAAGAGAGCCTAATACAGTTGCATCACTGAAAACTGAAGATGACCAAAGTAGTCACAAGCAACCATTGCAGCCACATCAACAAGCTGATCAAAATTCGACTTCCAACACTACAAAGAGAAGTTCAAGATTCCGGGGTGTCAGCAGACATAGATGGACTGGTCGGTTTGAAGCTCACTTATGGGACAAGCTCTCTTGGAACATAACACAAAAGAAGAAAGGGAAGCAAGGAGCATACGATGAAGAAGAATCTGCGGCTAGAGCATATGATTTAGCTGCACTTAAGTACTGGGGAACGTCAACTTTCACCAATTTCCCGATCACGGATTATGAGAGAGAGATAGAGATAATGCAGACTATGACGAAAGAGGAGTACTTGGCCACTTTAAGGAGAAAGAGTAGTGGCTTCTCAAGAGGCATATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCAAGGATAGGGAGAGTTTTTGGAAACAAGTATCTCTACCTAGGCACCTACAAGGGGATCCATGCTGTGACCAACTTTGATTTGAGCACTTACATAAGATGGTTAAAGCCTTCAGGAGCGAAAACTACAGAAGCAAAACTTGAATCAGAGGCAGTACCAGAGTATCAGACAGTGGCACCTCAATCGAACTGTACTCCAATAGAGAGGTCCAAGTCCTTGGCCCTTCATAGTAGCACTATCAGTTCAGATCATCTTAATTCCCCTCAAAAGCATGAAACCTTTGAAACCGAAACATACCAAATCTCCAGCACCAAGTCATCTTCTTCTCCCACTGCACTTGGCCTCCTCTTCCGGTCGTCGATATTTAGAGAATTGGTTGAAAAGAATTTGAACGTGTTTGGAGATGAAACTGATGGGGAAGACACAAAGGATCAACGGCCACAGGTAGCCAGTGATGATGATGAATTAGGTAGGATCTTTTATGATGGAAATGGCGACATACCCTTTCTGTGA	1074	0.4423	MVIKSEENMKRSWMVSVPASEFLVARGAKRRRREPNTVASLKTEDDQSSHKQPLQPHQQADQNSTSNTTKRSSRFRGVSRHRWTGRFEAHLWDKLSWNITQKKKGKQGAYDEEESAARAYDLAALKYWGTSTFTNFPITDYEREIEIMQTMTKEEYLATLRRKSSGFSRGISKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYKGIHAVTNFDLSTYIRWLKPSGAKTTEAKLESEAVPEYQTVAPQSNCTPIERSKSLALHSSTISSDHLNSPQKHETFETETYQISSTKSSSSPTALGLLFRSSIFRELVEKNLNVFGDETDGEDTKDQRPQVASDDDELGRIFYDGNGDIPFL*	358

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Dod02g2506	357	MobiDBLite	consensus disorder prediction	52	73	-	-
	Dod02g2506	357	PANTHER	BINDING PROTEIN, PUTATIVE-RELATED	5	350	-	-
	Dod02g2506	357	PANTHER	AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR	5	350	-	-
	Dod02g2506	357	SMART	rav1_2	173	220	IPR001471	GO:0003700\|GO:0006355
	Dod02g2506	357	SMART	rav1_2	74	143	IPR001471	GO:0003700\|GO:0006355
	Dod02g2506	357	MobiDBLite	consensus disorder prediction	320	347	-	-
	Dod02g2506	357	MobiDBLite	consensus disorder prediction	320	357	-	-
	Dod02g2506	357	MobiDBLite	consensus disorder prediction	26	78	-	-
	Dod02g2506	357	MobiDBLite	consensus disorder prediction	26	51	-	-
	Dod02g2506	357	Gene3D	AP2/ERF domain	73	139	IPR036955	GO:0003700\|GO:0006355
	Dod02g2506	357	Gene3D	AP2/ERF domain	172	215	IPR036955	GO:0003700\|GO:0006355
	Dod02g2506	357	SUPERFAMILY	DNA-binding domain	73	138	IPR016177	GO:0003677
	Dod02g2506	357	Pfam	AP2 domain	73	129	IPR001471	GO:0003700\|GO:0006355
	Dod02g2506	357	ProSiteProfiles	AP2/ERF domain profile.	74	137	IPR001471	GO:0003700\|GO:0006355
	Dod02g2506	357	SUPERFAMILY	DNA-binding domain	172	214	IPR016177	GO:0003677
	Dod02g2506	357	CDD	AP2	73	139	IPR001471	GO:0003700\|GO:0006355
	Dod02g2506	357	ProSiteProfiles	AP2/ERF domain profile.	173	204	IPR001471	GO:0003700\|GO:0006355

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Dod02g2506	Dod-Chr2	55354712	55357382	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Dod02g2506	48	218	AP2-EREBP Transcription Factor Family	AT5G57390	54.082	1.85e-64	209

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-AP2	Dod02g2506		AP2	1.2e-09	CL0081

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Dod02g2506	-		-	ahf:112716370	511.146