Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2493 ATGTCTAGCAGAAGGTCCAGGCAGCAATCAGGGTCTACAAGGATCTCAGATGACCAAATCATCGAGCTTGTTTCCAAGTTGCGCCAACTTGTTCCTGAGATTCGAGATAGGCGCTCTGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACCTGCAACTATATCAGAAGCTTACACAGAGAAGTTGATGACTTAAGCGAACGTTTGTCTCAGTTGCTGGCCACCATTGATGCGGATAGTCCTGAGGCTGCCATCATCAGGAGCCTAATTAACCAATAA 279 0.4659 MSSRRSRQQSGSTRISDDQIIELVSKLRQLVPEIRDRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLATIDADSPEAAIIRSLINQ* 93
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2493 92 Coils Coil 55 75 - -
Dod02g2493 92 Gene3D - 3 84 IPR036638 GO:0046983
Dod02g2493 92 Pfam Helix-loop-helix DNA-binding domain 22 59 IPR011598 GO:0046983
Dod02g2493 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
Dod02g2493 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Dod02g2493 92 CDD bHLH_AtPRE_like 9 75 - -
Dod02g2493 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Dod02g2493 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2493 Dod-Chr2 54995160 54997385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2493 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 75.000 5.42e-37 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod02g2493 HLH 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2493 - - gmx:100794486 160.999
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2493 02 54995160 54997385 Dod01g0122 01 2316206 2318039 PCT