Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2479 ATGGGAAGGCCACCGTGTTGTGATAAAGGTGTCAAGAAAGGATCTTGGACTCCTGAAGAAGACATTGTTTTGGTCTCTTATATCCAAGAACATGGTCCTGGCAATTGGAAGGCTGTTCCCTCCAATACTGGTTTGTTAAGGTGCAGTAAGAGTTGCAGGCTTAGATGGACGAATTACTTGAGGCCGGGAATCAAAAGGGGTAATTTCACAGACCAAGAGGAAAAGACGATAATTCACCTTCAAGCTCTTTTAGGGAACAGATGGGCTGCCATAGCTTCATACCTTCCACAGAGAACAGACAATGACATAAAAAACCATTGGAACACCTATTTGAAAAAAAGGCTCAAGAAATTGGAAACAGGTGGTGGTGCTGAAGGAGGAAGTTTAGGACATGCTGGGTTTTCATCAACTTCTCAGCCTATGCCTCGTGGCCAGTGGGAAAGGAGGCTCCAAACAGACATCCAAATGGCAAAGAGGGCTCTCAGTGAGGCACTCTCACCAGACAAAACAACACCTTCCTTATTATTGCCTGAACCAAACTTCTCCAATAATGTTACCTCCGTGTGTTCCACCAAAGTGACCAAACCAACAACAGAATCGCTATGCTATGCCTCAAGTGCTGACAACATAGCTCGGTTGCTGAAAAGGTGGGTGAAAAACCCACCAAAGGCATCACGTACTAACTCATCTGTGACCCAGAATTCCTTCAACAAGTTGGCTATTTCAGGGGCTGACACTGCTTCTAGCAAGGGAATAATAAATAATCCCATTGGAGCAAAGGGTAGTAGTAGTAATAGTATTAGTGGCAGTGTTGAGTTGTATGAGAAATTTGAGTCCTTGTTTGGTTATGAGTCTTTGGAATCTTCAAATTCTGAGTTTTCTCAAACTCTTTCACCTGAGGCTAATCTTTTCCAAGAGGAGAGCAAGCCTCATATTGGTGCATTGATGCCCTTGTATTTGCTTGAGAAATGGCTTCTAGATGAGACTGGTGGTCCTGATAAACTTAGCTGCAGTGATGTTACATCTTATGAAGATGCCACTGTATTTTAG 1050 0.4333 MGRPPCCDKGVKKGSWTPEEDIVLVSYIQEHGPGNWKAVPSNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKTIIHLQALLGNRWAAIASYLPQRTDNDIKNHWNTYLKKRLKKLETGGGAEGGSLGHAGFSSTSQPMPRGQWERRLQTDIQMAKRALSEALSPDKTTPSLLLPEPNFSNNVTSVCSTKVTKPTTESLCYASSADNIARLLKRWVKNPPKASRTNSSVTQNSFNKLAISGADTASSKGIINNPIGAKGSSSNSISGSVELYEKFESLFGYESLESSNSEFSQTLSPEANLFQEESKPHIGALMPLYLLEKWLLDETGGPDKLSCSDVTSYEDATVF* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2479 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 61 115 IPR017930 -
Dod02g2479 349 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 335 - -
Dod02g2479 349 Gene3D - 67 122 - -
Dod02g2479 349 CDD SANT 68 111 IPR001005 -
Dod02g2479 349 CDD SANT 15 60 IPR001005 -
Dod02g2479 349 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 60 IPR017930 -
Dod02g2479 349 SUPERFAMILY Homeodomain-like 10 107 IPR009057 -
Dod02g2479 349 SMART sant 65 113 IPR001005 -
Dod02g2479 349 SMART sant 12 62 IPR001005 -
Dod02g2479 349 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Dod02g2479 349 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Dod02g2479 349 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 335 - -
Dod02g2479 349 Gene3D - 12 65 - -
Dod02g2479 349 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Dod02g2479 349 Pfam Myb-like DNA-binding domain 66 111 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2479 Dod-Chr2 54761716 54763740 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2479 1 328 MYB Transcription Factor Family AT5G62470 48.324 1.27e-100 299
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Dod02g2479 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2479 K09422 - gmx:778080 436.417
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2479 02 54761716 54763740 Dod02g2479 02 54761716 54763740 ECH
Dod02g2479 02 54761716 54763740 Dod01g0126 01 2421569 2423335 PCT