Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2478 ATGAGGAAGCGCCAAGTGGTTGTGAGAAGAGAGGAACCTGTGAGAAGCGTTAGGAGCGTGAAATATGGGGAGTGCCAGAAGAATCACGCGGCAAATGTTGGAGGGTATGCGGTTGATGGCTGCAGGGAGTTCATGGCCAGTGGTGAGGAAGGCACAAGTGCTGCTCTGACCTGTGCTGCCTGTGGCTGCCACAGAAGCTTCCACAAGAGAGAGGTGGAGACTGAAGTAGTGTGTGAGTGCTCTTCACCTCCATCTAATGCGACTAGTTGA 270 0.5333 MRKRQVVVRREEPVRSVRSVKYGECQKNHAANVGGYAVDGCREFMASGEEGTSAALTCAACGCHRSFHKREVETEVVCECSSPPSNATS* 90
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2478 89 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 22 71 IPR006456 -
Dod02g2478 89 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 21 72 IPR006456 -
Dod02g2478 89 Pfam ZF-HD protein dimerisation region 20 72 IPR006456 -
Dod02g2478 89 PANTHER BNAA09G44460D PROTEIN 15 83 - -
Dod02g2478 89 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 15 83 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2478 Dod-Chr2 54713933 54714796 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2478 1 86 Zinc finger-homeobox gene family AT3G28917 72.449 5.27e-44 136
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod02g2478 ZF-HD_dimer 2.6e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2478 - - aprc:113868039 151.369