Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2477 ATGGACATAATCACCGCCGCCACCACCACCACTCCAAAATCTCCAGAACCGGAATCCGAAACACCGACCCGGATCCAACAACCCACAACAAAGCCCTTGTCATTCTCCAACGGTGTCCTCAAGCGCCACCACCCTCCCTCTCATCATCCCTACCACCAACACAACCACCTGGCCAACCCCGCCGCCGTGGCGGTCGTGATATACAAAGAATGCCAGAAAAACCACGCCGCCAGCCTCGGCGGTCACGCCCTTGACGGCTGCGGAGAGTTCATGCCGGCCCCAAGCGCCACCGCCGGCGACCCAACCTCCATCAAGTGCGCCGCCTGCGGCTGCCACCGCAACTTCCACCGCCGCGACAACGACGAGCCACCCTCTCCACTCTCTCCCGTCATCGAGTACCAGCCTCACCACCGCCACCATCCTCCCCCGCCGCCGCCTCCGCCACCCTTCCACCCTCTAAACAACCACCACCATCACCACCACCGGAGCCCTAGCTCGGCCTCCCCACCTCCTATCTCCTCGTCGTACTACCCTTCCGCCCCTCACATGCTCCTCGCCCTCTCCTCCGGAGGCGGCCTCTCCGTCCCTCCGGAAAACACCGCCGCCCCCGCCTCCACCAACCACCCGTTAGCCACCTCACGAAAACGGTTCAGGACCAAGTTCACTCCAGAACAGAAGGAGAAAATGCTCCGCTTCGCTGAACGCGTTGGTTGGAAGATGCAGAAGAGAGATGAGGATCTCGTTCAGGAGTTTTGCCATGAAGTCGGCGTCGATCGTGGGGTTCTCAAGGTTTGGATGCACAACAACAAGAACACTTTCGGGAAACGAGATAATAACGACCTTGCTGCTACTCCTCCTGGTGCTGATGCAAATAATGCTAATGCTAATGTTAATGCTGTTACTGCTAGGAATGTTCTGGAACAAATCCCTATTAACAACAACGATAACATTAACGGTAACGGTCTTAACGGTGAGATCAATGGCGGTGAGGGGAGCGGCAACGATGATGGTGTTGGGAACAGGGATGATGATGATAGCGGCGCCAACGGTGGTGGCACTAATGGGTCGTCTTCTTCTTCTTGA 1083 0.5762 MDIITAATTTTPKSPEPESETPTRIQQPTTKPLSFSNGVLKRHHPPSHHPYHQHNHLANPAAVAVVIYKECQKNHAASLGGHALDGCGEFMPAPSATAGDPTSIKCAACGCHRNFHRRDNDEPPSPLSPVIEYQPHHRHHPPPPPPPPPFHPLNNHHHHHHRSPSSASPPPISSSYYPSAPHMLLALSSGGGLSVPPENTAAPASTNHPLATSRKRFRTKFTPEQKEKMLRFAERVGWKMQKRDEDLVQEFCHEVGVDRGVLKVWMHNNKNTFGKRDNNDLAATPPGADANNANANVNAVTARNVLEQIPINNNDNINGNGLNGEINGGEGSGNDDGVGNRDDDDSGANGGGTNGSSSSS* 361
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2477 360 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 6 299 - -
Dod02g2477 360 MobiDBLite consensus disorder prediction 311 360 - -
Dod02g2477 360 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 68 119 IPR006456 -
Dod02g2477 360 Gene3D - 201 274 - -
Dod02g2477 360 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 68 119 IPR006456 -
Dod02g2477 360 MobiDBLite consensus disorder prediction 188 215 - -
Dod02g2477 360 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 6 299 - -
Dod02g2477 360 MobiDBLite consensus disorder prediction 116 175 - -
Dod02g2477 360 SUPERFAMILY Homeodomain-like 205 275 IPR009057 -
Dod02g2477 360 MobiDBLite consensus disorder prediction 1 36 - -
Dod02g2477 360 MobiDBLite consensus disorder prediction 311 327 - -
Dod02g2477 360 MobiDBLite consensus disorder prediction 1 54 - -
Dod02g2477 360 Pfam ZF-HD protein dimerisation region 66 120 IPR006456 -
Dod02g2477 360 MobiDBLite consensus disorder prediction 193 212 - -
Dod02g2477 360 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 214 271 IPR006455 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2477 Dod-Chr2 54686878 54688265 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2477 1 270 ZF-HD Transcription Factor Family AT5G15210 50.909 1.25e-76 235
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Dod02g2477 ZF-HD_dimer 4.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2477 - - ahf:112783874 350.517
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2477 02 54686878 54688265 Dod01g0129 01 2483621 2484334 PCT