Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2469 ATGGCTCTTCTTGGCTTTCTTCTTCTGGGGTTTGTCTCTATGGTCTCATATGTAACTGGCTATGGATATGGTGGTTGGACCAATGCACACGCCACATTCTATGGTGGTGGTGATGCTTCTGGGACAATGGGTGGGGCTTGTGGGTATGGAAACTTGTATAGCCAAGGTTATGGGACTAATACAGCAGCACTGAGCACTGCATTGTTCAATAATGGCTTGAGCTGTGGTGCATGTTTTGAAATCAAATGTGTAAATGATCCACAATGGTGTTTCCCTGGCTCCATTGTGGTCACTGCAACTAATTTCTGCCCACCTGGTGGCTGGTGTGACCCTCCCAATCACCATTTTGACCTGTCTCAACCTGTCTTCCAGCAAATCGCCCAATATAAAGCTGGTATTGTTCCTGTGGTTTACAGAAGGGTGAGGTGCAGGAGAAGAGGTGGAATTAGGTTCACCATCAATGGCCATTCTTACTTCAATTTAGTCCTAGTGACTAATGTTGGAGGTGCTGGTGATGTGCATTCAGTGGCCATCAAAGGTTCAAGAACTAGATGGCAAGCCATGTCAAGGAATTGGGGTCAAAATTGGCAGAGCAACTCTTACCTTAATGGACAGAGCCTTTCCTTTTTAGTCACCACCAGTAACGGCCACAGGGTGGTCTCATATAATGTTGTCCCTGCTAGTTGGTCCTTTGGACAGACTTACACTGGAAGGCAGTTCCCTTACTAA 729 0.4636 MALLGFLLLGFVSMVSYVTGYGYGGWTNAHATFYGGGDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGACFEIKCVNDPQWCFPGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQQIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFLVTTSNGHRVVSYNVVPASWSFGQTYTGRQFPY* 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2469 242 SUPERFAMILY PHL pollen allergen 145 237 IPR036749 -
Dod02g2469 242 PRINTS Expansin/Lol pI family signature 185 199 IPR007118 GO:0005576
Dod02g2469 242 PRINTS Expansin/Lol pI family signature 25 40 IPR007118 GO:0005576
Dod02g2469 242 PRINTS Expansin/Lol pI family signature 43 61 IPR007118 GO:0005576
Dod02g2469 242 PRINTS Expansin/Lol pI family signature 65 83 IPR007118 GO:0005576
Dod02g2469 242 PRINTS Expansin/Lol pI family signature 223 237 IPR007118 GO:0005576
Dod02g2469 242 PRINTS Expansin/Lol pI family signature 131 147 IPR007118 GO:0005576
Dod02g2469 242 Gene3D - 12 144 IPR036908 -
Dod02g2469 242 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 158 237 IPR007117 -
Dod02g2469 242 PANTHER EXPANSIN-A15 6 240 IPR002963 GO:0009664
Dod02g2469 242 PANTHER EXPANSIN 6 240 - -
Dod02g2469 242 SUPERFAMILY Barwin-like endoglucanases 25 166 IPR036908 -
Dod02g2469 242 Pfam Lytic transglycolase 61 138 IPR009009 -
Dod02g2469 242 SMART dpbb_1 61 138 IPR007112 -
Dod02g2469 242 Gene3D - 148 240 IPR036749 -
Dod02g2469 242 Pfam Expansin C-terminal domain 149 226 IPR007117 -
Dod02g2469 242 PRINTS Expansin signature 56 70 IPR002963 GO:0009664
Dod02g2469 242 PRINTS Expansin signature 83 94 IPR002963 GO:0009664
Dod02g2469 242 PRINTS Expansin signature 194 215 IPR002963 GO:0009664
Dod02g2469 242 PRINTS Expansin signature 159 180 IPR002963 GO:0009664
Dod02g2469 242 PRINTS Expansin signature 123 136 IPR002963 GO:0009664
Dod02g2469 242 PRINTS Expansin signature 223 239 IPR002963 GO:0009664
Dod02g2469 242 PRINTS Expansin signature 147 159 IPR002963 GO:0009664
Dod02g2469 242 PRINTS Expansin signature 95 105 IPR002963 GO:0009664
Dod02g2469 242 PRINTS Expansin signature 106 123 IPR002963 GO:0009664
Dod02g2469 242 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 44 148 IPR007112 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2469 Dod-Chr2 54480547 54482571 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2469 1 240 Expansin Gene Family AT2G03090 79.435 3.13e-142 397
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2469 K20628 - gmx:100790170 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod05g1750 05 42910375 42912608 Dod02g2469 02 54480547 54482571 ECH
Dod02g1660 02 20651390 20653940 Dod02g2469 02 54480547 54482571 ECH
Dod04g1108 04 31566879 31568659 Dod02g2469 02 54480547 54482571 ECH
Dod02g2469 02 54480547 54482571 Dod02g2469 02 54480547 54482571 ECH