Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2406 ATGTCGAGCTCACGCAGGCTATGGAGGCGTGACTGCACCTTGGAGGTTGGTGTCATTGTTCGTGACTTTCATGGTATTGCTCAAGTCAAGAGTGTCACTGGCAGCAAAATCCTCTCCATTTTGAAAGCTCACGGAATTGCGCCTGAGATCCCTGAGGATCTATACCATTTGATCAAGAAGGCAGTGTTGATTAGGAAGCATTTGGAAAGGAACAGAAAGGACAAGGACTCTAAGTTCAGGTTGATTCTTTTGGAGAGCATAATCCACAGGCTTGCTTGCTACTACAAGAAGACCAAAAAGCTCCCACCTGCGTGGAAGAATGCATTGAAGTGGAAACTCAAGAACATAGACAAGGTTACATTTCCAGATGTTGTATACTTGGTTGATGCAATTGAAAGGGAAGATGTGCTTATCAAAGCCTCTTATTACCGCGGAGCCATGAGTATTTTGCTTGTATACGATGTCACTGATGAGTTATCTTTTAACAGTAATGTTCCTTACTCCATAAGCTTTTAA 516 0.4283 MSSSRRLWRRDCTLEVGVIVRDFHGIAQVKSVTGSKILSILKAHGIAPEIPEDLYHLIKKAVLIRKHLERNRKDKDSKFRLILLESIIHRLACYYKKTKKLPPAWKNALKWKLKNIDKVTFPDVVYLVDAIEREDVLIKASYYRGAMSILLVYDVTDELSFNSNVPYSISF* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2406 171 PANTHER - 15 107 - -
Dod02g2406 171 PANTHER RIBOSOMAL PROTEIN S15P/S13E 15 107 IPR023029 -
Dod02g2406 171 ProSitePatterns Ribosomal protein S15 signature. 64 94 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod02g2406 171 Gene3D - 49 112 - -
Dod02g2406 171 CDD Ribosomal_S15p_S13e 36 106 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod02g2406 171 SUPERFAMILY S15/NS1 RNA-binding domain 32 106 IPR009068 -
Dod02g2406 171 Pfam Ribosomal protein S15 41 109 IPR000589 GO:0003735|GO:0005840|GO:0006412
Dod02g2406 171 Gene3D - 13 48 - -
Dod02g2406 171 SMART Ribosomal_S15_2 36 114 IPR000589 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2406 Dod-Chr2 52968990 52971977 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2406 15 106 Cytoplasmic Ribosomal Protein Gene Family AT4G00100 86.957 4.02e-53 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2406 K02953 - tcc:18605402 165.622