Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2368 ATGGGGAGAGGGAAGGTCGAGCTGAAGCAGATCGAGAACAAAATCAACCGCCAAGTGACGTTCTCGAAGAGGAGAACGGGGCTGCGCAAGAAAGCCCACGAAATCTCAGTGCTGTGTGATGCTCAGGTTGCATTGATTGTTTTCAACGCAAAAGGGAAACTCTTTGAGTATTCATCTGAATCCAGCATGGAAAGCATCCTGGAACAATATGAGAAACATATTGCTCATACATCGAAACTTGATGGAGCTGATACTGAATCACAGGGAAGCTTGTCATTGGAATACTACAAGCTCAGTAGAAAAATTGACGTCTTAGAGAGGAACTTAAGGAACTTCGTGGGACATGATCTGGATCCCTTGAGCTTGAGAGAGCTTCAGAGTTTGGAGCAGCAACTTGACGCAGCTTTAAAGCGAATCCGAACAAGAAAGAACCATGTCATGAATGAATCCATCACGGTGATACAGAAAAGGGCAAAGGCATTGCAGGAACAAAATAACTCGCTAACAAAGAAGATTAAGGATAAGGAGAAGACACTAGTTGAACGTCCACACTGCTTGCCAGAAACCCTAAGCCAAAATTCTTCCTCCTTAAACGTAGATCCTACCAAGCTACAATCACCAGAAAGGCTAGCTCTTACACTGGCACTCAGTGGGAGTTTACAAGCAAGAACAATAGCTGGAGGAAGTGCCTGA 693 0.4459 MGRGKVELKQIENKINRQVTFSKRRTGLRKKAHEISVLCDAQVALIVFNAKGKLFEYSSESSMESILEQYEKHIAHTSKLDGADTESQGSLSLEYYKLSRKIDVLERNLRNFVGHDLDPLSLRELQSLEQQLDAALKRIRTRKNHVMNESITVIQKRAKALQEQNNSLTKKIKDKEKTLVERPHCLPETLSQNSSSLNVDPTKLQSPERLALTLALSGSLQARTIAGGSA* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2368 230 PANTHER TRUNCATED TRANSCRIPTION FACTOR CAULIFLOWER A-LIKE ISOFORM X1 1 198 - -
Dod02g2368 230 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Dod02g2368 230 PANTHER MADS BOX PROTEIN 1 198 - -
Dod02g2368 230 SUPERFAMILY SRF-like 2 78 IPR036879 GO:0003677|GO:0046983
Dod02g2368 230 Pfam K-box region 86 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod02g2368 230 Coils Coil 151 178 - -
Dod02g2368 230 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Dod02g2368 230 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Dod02g2368 230 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Dod02g2368 230 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Dod02g2368 230 Coils Coil 122 145 - -
Dod02g2368 230 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Dod02g2368 230 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Dod02g2368 230 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Dod02g2368 230 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2368 Dod-Chr2 51973308 52002940 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2368 1 179 MADS-box Gene Family AT1G26310 60.221 5.40e-73 221
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Dod02g2368 K-box 1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2368 K09264 - gmx:100820188 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod01g0268 01 5046808 5057016 Dod02g2368 02 51973308 52002940 PCT