Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2313 ATGGAACGCGTGGTGGCGACGGTGAGTGGTTACCATGGTTCGGAGCGGTTCAATCTCATCAAGCTGATTTCGCACGCCGGCGCCAATTACGTTGGCCCAATGTCCAAATCAATCACGCACCTGATTTGTTGGAAATTTGAGGGAAGGAAGTATGACATTGCACAAAAGTTCAATATAGTTATAGTCAACCACCGATGGATTGAAGACTGCATTAAGGCAGGAAGGCGTGTACCCGAAGATTCTTATACCTTGCAAAGTGGAGAGGAAGTTGGGTCACTGTTACTGGAAGTTCCAGTCACTGTTCAAGCAAGTAGCTTGACAAAGAATAGAGTGATTAGTGACCGATTATATGATATTGGCTCTGGAATGCAAACAACTGAGTTAAGTTCCGGAGCTTCTGGAAATTCTGTTTGGGAAAATAGTTGTTTAATTGACAAGCATGAGGAGTCAAGTGCTTATTCTTCTAGGAAGTCAAGGAAAGGAAAAAGAAGTATATGTGATGGCAATGGAGTCAGTACTGTGGCTGGACCTTCTCGGGAAGGAAAAAGGGTTGTAAAAAATATTGTTGAAGTGGTGTTGGATCCTTCATCGGATTTAAACCAGGATGAGCTCCTAAATAGATTGGATAGATTACACCATGATGGTTCAGCTACCTCTAGCCTCTCTGGTGGTGTCAATAATAAAAATATACTGGAAAATAGAGAAGCACCAGACGCTGGATTATATAATCAAAGTGAAACTATCAATGGAGCTTCAGATAGCATTGATCAGATTGAAAACTTGAATGATATATCTACACTTAGAAGTTCAACTTTGTCCGTAGAAGATCACCTACCTATGACGCAAACATCAGTAGATGCATGTTCTGGTGCTGAAAAGTTCACAAATGGTGATCAGGATGATAATGTTGCTGGCTTACCTACCTCAAGAGAGCTGTCATGTGTTATCTGTTTCGCATATTTTAGCTCAACAAGGGGGATTCTTCCATGTGGACATCGATTTTGCTATCCATGCATCCAGAGCTGGGTTGATCATATGGCTTCAATGAGGAAAAGATCAACCTGCCCATTGTGCAAGGCAAGTTTTTCGGTGATCAAGAAAGTTGAGGATGCAGCCACTACCGATCAAAAGATATACTCTCAGACAATCCCATGTGACAATTCAGCGAAAGATATTTTTGTCCTCCCGGATCAAGAATCTAATTATAATTTTGAGTCCTCAGAGGCAAGTGCGTGCGTAGTTTGCCGTGGTCGGGAACCTGAGGATCTCCTTGAAAGGTGTGGGTATTGCCGAGCTCGAAGAATCCATCTCTATTGCCTGGACCCTCCTCTACTGCCGTGGACATGCAATCCCTGTAAGGAACTTCGGAGAATTTACCATAATCACTCATATTAG 1395 0.4265 MERVVATVSGYHGSERFNLIKLISHAGANYVGPMSKSITHLICWKFEGRKYDIAQKFNIVIVNHRWIEDCIKAGRRVPEDSYTLQSGEEVGSLLLEVPVTVQASSLTKNRVISDRLYDIGSGMQTTELSSGASGNSVWENSCLIDKHEESSAYSSRKSRKGKRSICDGNGVSTVAGPSREGKRVVKNIVEVVLDPSSDLNQDELLNRLDRLHHDGSATSSLSGGVNNKNILENREAPDAGLYNQSETINGASDSIDQIENLNDISTLRSSTLSVEDHLPMTQTSVDACSGAEKFTNGDQDDNVAGLPTSRELSCVICFAYFSSTRGILPCGHRFCYPCIQSWVDHMASMRKRSTCPLCKASFSVIKKVEDAATTDQKIYSQTIPCDNSAKDIFVLPDQESNYNFESSEASACVVCRGREPEDLLERCGYCRARRIHLYCLDPPLLPWTCNPCKELRRIYHNHSY* 465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2313 464 Pfam twin BRCT domain 4 66 IPR001357 -
Dod02g2313 464 MobiDBLite consensus disorder prediction 149 178 - -
Dod02g2313 464 SUPERFAMILY FYVE/PHD zinc finger 399 455 IPR011011 -
Dod02g2313 464 SMART BRCT_7 1 74 IPR001357 -
Dod02g2313 464 ProSiteProfiles Zinc finger RING-type profile. 314 359 IPR001841 -
Dod02g2313 464 PANTHER F5A8.9 PROTEIN 1 461 - -
Dod02g2313 464 MobiDBLite consensus disorder prediction 149 164 - -
Dod02g2313 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 394 454 IPR013083 -
Dod02g2313 464 SUPERFAMILY RING/U-box 313 367 - -
Dod02g2313 464 CDD RING-HC 314 358 - -
Dod02g2313 464 SUPERFAMILY BRCT domain 2 85 IPR036420 -
Dod02g2313 464 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 294 384 IPR013083 -
Dod02g2313 464 ProSiteProfiles BRCT domain profile. 1 84 IPR001357 -
Dod02g2313 464 Gene3D BRCT domain 1 89 IPR036420 -
Dod02g2313 464 ProSitePatterns Zinc finger RING-type signature. 330 339 IPR017907 -
Dod02g2313 464 Pfam Zinc finger, C3HC4 type (RING finger) 314 358 IPR018957 GO:0046872
Dod02g2313 464 SMART ring_2 314 358 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2313 Dod-Chr2 50997704 51003795 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2313 22 90 Core DNA Replication Machinery Family AT4G02110 42.254 2.48e-12 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2313 - - vra:106765083 627.091