Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2277 ATGTTTGTGGGGCCTTTTTACCCCGAGCCATTTCTGTTTGTTTGTATTGTTTCTCTTCTAGGCTTAGGGCCTCATTTATACCCAAAAAAAACCCTACCCCATTCACTTCGCTCTCACAACTACCCAAATCACAAACAACACACTAACACTTTCACTGTCTTCAGAAACCAAACTCCACCCTCGCTTTCGTTCCCTCTCTCTCTCTATCAGAGAAAGGTGAAAGATCAAGCAGTAGTGGCAGCAAACTACTCAAAGCGAACTCCTCCAGTGCCGCCATGCTTGGGGGCGATCCCTCTCCCTGTGTCTATCGCGTATCACAACACCGCCTTCATCTCTCTTTCTCTCCTTCTGAGACCTCTCTTCTCAGGAAGCGAGGCTTCGCGTAACAACAACACCTCACCAAGTTCAAGCCTCCTTTTCCATAGGACTTATAGGTTCTCCAGAATATTCATAGATTTGTTGAGGGTTCCATGGCCTCTAAAAATGAAAGCGGGAACTCAACTGATACCATCCTATCATCTCTCTTTGCTTTGTTTGTATTATATTACCATTGCCCCATGCTCACCAACTGCAAAGGTTCTTGCCAAAATTCCTAAGCCCAGCCAAGAGGGCTTGGTCTGTTTGAACCGTGCAGGAGTTACTGGTCTCTTTGCCACTGACTTGCTGAAAGTAACCACTGTTCCCATTGCCACTAATGACGCTAGCTGTTCAGTGGCAAGATTGAGAGTTATCCAGGGATTGTCCCAATTTGTCCCCCTTTATGTTAGCTGCACGTTGGAGGCCGAAGGATACATACAAAGATCCAGACGATGGGCGGCAACGGTTTGGTTGGAAACTAGGAATAACTTGTTGAAAAAGGGTATAGCATCATTAAGGAGGTTTCTTGATAACCCAGCTGTCTTTGATTTGGCTCAGAACCGATATTTTGAGGATGAAGCTTTCATTGGATACTTAAAGTATCCACATTGTCTTTATTTTCTCGAGCTTCTTCAGAAAGCAAATTTCCGCAATGCAATGGCACATCCCAACAATAAGGAACTGGCACACAGACAACAATTCTACTTCTGGAAGAACTATAGGAACAATCGGCTAAAACACATTTTGCCTAGATCACTTTCTGAACCTAGTGCCACATCTGCACCTTCTGCTGCCTCAGCTGCTACTCCGACTCAGCCACCTGTGCCTGCACTGCCACCAGTGCCTGCTACAAATGTTGCTGTGACAGCATCATCTACTCAAGCTCTTTCTCCAATGCCGTATGGTATGCCCTCTGGATCTGCTCTTGCTAAAAATGACATGAGGAATCCTTCATTTGATAGAAGGAAGAGAAAGTGA 1335 0.4532 MFVGPFYPEPFLFVCIVSLLGLGPHLYPKKTLPHSLRSHNYPNHKQHTNTFTVFRNQTPPSLSFPLSLYQRKVKDQAVVAANYSKRTPPVPPCLGAIPLPVSIAYHNTAFISLSLLLRPLFSGSEASRNNNTSPSSSLLFHRTYRFSRIFIDLLRVPWPLKMKAGTQLIPSYHLSLLCLYYITIAPCSPTAKVLAKIPKPSQEGLVCLNRAGVTGLFATDLLKVTTVPIATNDASCSVARLRVIQGLSQFVPLYVSCTLEAEGYIQRSRRWAATVWLETRNNLLKKGIASLRRFLDNPAVFDLAQNRYFEDEAFIGYLKYPHCLYFLELLQKANFRNAMAHPNNKELAHRQQFYFWKNYRNNRLKHILPRSLSEPSATSAPSAASAATPTQPPVPALPPVPATNVAVTASSTQALSPMPYGMPSGSALAKNDMRNPSFDRRKRK* 445
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2277 444 Gene3D Mediator of RNA polymerase II, submodule Med31 (Soh1) 291 356 IPR038089 -
Dod02g2277 444 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 295 444 - -
Dod02g2277 444 MobiDBLite consensus disorder prediction 372 389 - -
Dod02g2277 444 PANTHER MEDIATOR OF RNA POLYMERASE II TRANSCRIPTION SUBUNIT 31 295 444 IPR008831 GO:0003712|GO:0006355|GO:0016592
Dod02g2277 444 MobiDBLite consensus disorder prediction 413 444 - -
Dod02g2277 444 MobiDBLite consensus disorder prediction 372 401 - -
Dod02g2277 444 Pfam SOH1 307 359 IPR008831 GO:0003712|GO:0006355|GO:0016592
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2277 Dod-Chr2 49893902 49917104 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SOH1 Dod02g2277 Med31 1.5e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2277 K15153 - gmx:100527879 188.734