Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2210 ATGGCTAATCTTTCATGCTTCTTTATTCTCTTTGCTCTTTCTCTTCTTACCCCCTGCATTGTCTCTTCCTCCGCAGTTCATCAAGACCCTGAGCTAGTTGTACAAGACGTAAAAAGGAGCATAAATGCCTCTAGAAGAAACTTGGGTTATCTATCATGTGGAACTGGTAACCCCATTGATGATTGCTGGCGTTGTGACCCCAATTGGGAGAACAACCGTCAAAGGCTAGCTGATTGTGCCATTGGGTTCGGCAAGGACGCCAGTGGTGGAAGAAATGGTCGAATCTATGTTGTCACTGACTCTGGTGATGATGACCCAGTGAACCCAAGGCCAGGAACTCTGAGGCATGCTGCTATACAAGATGAGCCATTGTGGATCATTTTCAAGAGAGATATGGTCATCAATCTCAAGCAAGAGCTTTTGGTGAATTCCTTCAAGACAATTGATGGGAGGGGTGCTAGTGTTCACATTGCTGGTGGGGGATGCATCACAATACACTATGTGAGCAACATCATCATCCATGGCATTCACATCCATGATTGTAAGCCAACAGGGAACACCAACATCAGAGACTCTCCACACCATTCTGGCTTTTGGACTGTGTCGGATGGTGATGGAGTGTCCATCTTTAACTCAAGGCATGTATGGGTTGATCATTGCTCGTTGTCTAACTGCCATGATGGCCTCATTGATGCCATCCATGGATCCACGGCTATCACCATCTCTAACAACTACATGACCCATCATGACAAGGTAATGCTCTTGGGCCACAGTGACTCCTACACACAAGACAAGGGCATGCAAGTCACAGTAGCCTTCAATCATTTTGGAGAAGGCCTTGTCCAAAGAATGCCAAGGTGTAGGCACGGGTATTTTCACGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCTATTGGTGGGAGTGCTAACCCTACTATCAACAGCCAAGGAAACAGGTTCCTTGCACCAGATAGCAGGTTTAGCAAGGAGGTGACCAAGCATGAGGATGCTCCACAGAATGAATGGATGGGCTGGAACTGGAGGTCAGAAGGGGACTTGTTCTTGAATGGAGCATTCTTCAGGCAATCTGGTGCTGGTGCTTCTTCTAGCTATGCTAGGGCCTCAAGTCTTAGTGCAAGACCATCTTCTCTGGTTGGCTCCATGACCATCACTGCTGGTGTACTTAACTGCAGGAAGGGCACACGTTGTTGA 1218 0.4729 MANLSCFFILFALSLLTPCIVSSSAVHQDPELVVQDVKRSINASRRNLGYLSCGTGNPIDDCWRCDPNWENNRQRLADCAIGFGKDASGGRNGRIYVVTDSGDDDPVNPRPGTLRHAAIQDEPLWIIFKRDMVINLKQELLVNSFKTIDGRGASVHIAGGGCITIHYVSNIIIHGIHIHDCKPTGNTNIRDSPHHSGFWTVSDGDGVSIFNSRHVWVDHCSLSNCHDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKGMQVTVAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFLAPDSRFSKEVTKHEDAPQNEWMGWNWRSEGDLFLNGAFFRQSGAGASSSYARASSLSARPSSLVGSMTITAGVLNCRKGTRC* 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2210 405 Gene3D - 56 398 IPR012334 -
Dod02g2210 405 SUPERFAMILY Pectin lyase-like 41 399 IPR011050 -
Dod02g2210 405 PANTHER PECTATE LYASE 18-RELATED 4 402 IPR045032 GO:0030570
Dod02g2210 405 PRINTS Pollen allergen Amb family signature 139 155 IPR018082 -
Dod02g2210 405 PRINTS Pollen allergen Amb family signature 376 399 IPR018082 -
Dod02g2210 405 PRINTS Pollen allergen Amb family signature 305 324 IPR018082 -
Dod02g2210 405 PRINTS Pollen allergen Amb family signature 347 371 IPR018082 -
Dod02g2210 405 PRINTS Pollen allergen Amb family signature 79 96 IPR018082 -
Dod02g2210 405 PRINTS Pollen allergen Amb family signature 283 302 IPR018082 -
Dod02g2210 405 PRINTS Pollen allergen Amb family signature 103 128 IPR018082 -
Dod02g2210 405 PRINTS Pollen allergen Amb family signature 203 224 IPR018082 -
Dod02g2210 405 SMART amb_all 131 328 IPR002022 -
Dod02g2210 405 Pfam Pectate lyase 138 322 IPR002022 -
Dod02g2210 405 PANTHER PECTATE LYASE 4 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2210 Dod-Chr2 47600195 47602492 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2210 7 405 Polysaccharide Lyase AT5G63180 75.931 0.0 622
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2210 K01728 - gmx:100794814 763.451