Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Dod02g2133 | ATGGGAATGAAGCGAAAGCAGCCACCGAAATCCAGTCAATCCGCCCAGCTTGAAGAACCCCCACTCAAGCATCCTCATCAACAACCTCAAATTGATTTGGAAGCAGAGTACGAGGAGGTCGAAGAGGAAGTCGAAGAAGAAGTCGAAGAAGAAGTGGAAGAGGTTGAACAAGAAGAAGACGAAGAAGAAGATATCGAAGATAAAGATAATAATACCAATGATCCCGGTCATGCCCAAAACAAGGCGACCGATCAGACGGTCAAGGCGCCCTCCACGTCATCATTCGGCGGCAACGATGACGACGACGAAGACCCGATCCAGACGCTTCTGGAACCCTTCAGTAAGGACCGGATCGCCAGCCTGCTGTGCGAGGCGGCGAGCAAGCACAGAGACGTGGCGGACCGGATCCGGAGCCTTGCCAACGCGGATCCGGCCCACCGGAAGATCTTCGTGCACGGCCTAGGCTGGGACACGACGGCCGAGACCCTTACAGCGGCGTTCTGGCAGTACGGCGAGATCGAGGACTGCAAGGCCGTCTCCGACAAAGTCTCCGGCAAGTCCAAGGGCTACGGCTTCATCCTCTTCAAGACCCGCCGCGGTGCCCGCGAGGCGCTGCGGCAGCCGCAGAAGAAGATCGGCAACCGCATGACGGCGTGCCAGCTGGCATCCGTCGGCCCGGTTTCAAACCCCCCGTCGCAAACGCCGACGGTCCAGAACTCGGGGGCGCCGGCGGGGTCGGAATACACGCAGAGGAAGATCTACGTGAGCAACGTGGGCGCGGACTTGGACCCGCAGAGGCTGCTCGCGTTCTTCTCGCGTTTCGGGGCAATGGAGGAGGGGCCGTTAGGGCTTGACAAGGTGACCGGGAAGCCGAAGGGGTTCTGCTTGTTCGTGTACAAGAGCGTGGAGGGCGCCAAGAAAGCCTTGGAGGAGCCGCACAAGGAGTTCGAGGGCCACCTCTTGCACTGCCAGAAAGCCATCGATGGTCCCAAGCTGGGGAAACAGCAGCAACAACAGCATTACCACAATAATGCGCAGAAGATGGCGACGAACAATTCTGGCTATGTTGGGGGCACTGCTCCCACGCCAGGACACTTGATGGCACCGTCTGGGCCGGCAACTGGGTATAACCAGGGTGCTGCAGCTGCGCAGACGCTGAATCCTGCTATCGGGCAGGCACTGACGGCCCTGCTTGCTTCCCAGGGTGCTGGCTTGGGGCTGACTAGTTTGTTGGGAACGCTGGGATCACCTGTGGGAGTGAATCCTGGTGGACCGGCCGCGGTTCATGGAATGCAGGGTGGTTACAATGCACAGGCAAATGTGAATCCAGGGGTTGTTGGGGGATATGCGAATCAGGTGGGGTTGCAAAGTGTATATCCAAACCAGCAGGTGGGTCAGGGCAGTGGCTCTGGAAGAGGGCAGCAGCAACAGCAACAGCATGTTGTTGGGCAGTATGGTGGTGTTGCCCCTTACATGGGGCACTAG | 1485 | 0.5879 | MGMKRKQPPKSSQSAQLEEPPLKHPHQQPQIDLEAEYEEVEEEVEEEVEEEVEEVEQEEDEEEDIEDKDNNTNDPGHAQNKATDQTVKAPSTSSFGGNDDDDEDPIQTLLEPFSKDRIASLLCEAASKHRDVADRIRSLANADPAHRKIFVHGLGWDTTAETLTAAFWQYGEIEDCKAVSDKVSGKSKGYGFILFKTRRGAREALRQPQKKIGNRMTACQLASVGPVSNPPSQTPTVQNSGAPAGSEYTQRKIYVSNVGADLDPQRLLAFFSRFGAMEEGPLGLDKVTGKPKGFCLFVYKSVEGAKKALEEPHKEFEGHLLHCQKAIDGPKLGKQQQQQHYHNNAQKMATNNSGYVGGTAPTPGHLMAPSGPATGYNQGAAAAQTLNPAIGQALTALLASQGAGLGLTSLLGTLGSPVGVNPGGPAAVHGMQGGYNAQANVNPGVVGGYANQVGLQSVYPNQQVGQGSGSGRGQQQQQQHVVGQYGGVAPYMGH* | 495 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Dod02g2133 | 494 | Gene3D | - | 138 | 225 | IPR012677 | - | |
| Dod02g2133 | 494 | Coils | Coil | 30 | 68 | - | - | |
| Dod02g2133 | 494 | SUPERFAMILY | RNA-binding domain, RBD | 144 | 231 | IPR035979 | GO:0003676 | |
| Dod02g2133 | 494 | MobiDBLite | consensus disorder prediction | 226 | 245 | - | - | |
| Dod02g2133 | 494 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 147 | 224 | IPR000504 | GO:0003723 | |
| Dod02g2133 | 494 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 251 | 339 | IPR000504 | GO:0003723 | |
| Dod02g2133 | 494 | SMART | rrm1_1 | 148 | 220 | IPR000504 | GO:0003723 | |
| Dod02g2133 | 494 | SMART | rrm1_1 | 252 | 324 | IPR000504 | GO:0003723 | |
| Dod02g2133 | 494 | CDD | RRM_RBM24_RBM38_like | 251 | 326 | - | - | |
| Dod02g2133 | 494 | MobiDBLite | consensus disorder prediction | 1 | 107 | - | - | |
| Dod02g2133 | 494 | MobiDBLite | consensus disorder prediction | 75 | 96 | - | - | |
| Dod02g2133 | 494 | PANTHER | GEO13361P1-RELATED | 30 | 494 | - | - | |
| Dod02g2133 | 494 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 253 | 321 | IPR000504 | GO:0003723 | |
| Dod02g2133 | 494 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 149 | 215 | IPR000504 | GO:0003723 | |
| Dod02g2133 | 494 | MobiDBLite | consensus disorder prediction | 34 | 69 | - | - | |
| Dod02g2133 | 494 | MobiDBLite | consensus disorder prediction | 349 | 371 | - | - | |
| Dod02g2133 | 494 | PANTHER | - | 30 | 494 | - | - | |
| Dod02g2133 | 494 | SUPERFAMILY | RNA-binding domain, RBD | 241 | 340 | IPR035979 | GO:0003676 | |
| Dod02g2133 | 494 | Gene3D | - | 245 | 354 | IPR012677 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Dod02g2133 | Dod-Chr2 | 43356496 | 43362229 | Dispersed/Transposed |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Dod02g2133 | 244 | 367 | C2H2 Transcription Factor Family | AT2G19380 | 30.952 | 5.36e-11 | 63.2 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Dod02g2133 | K12741 | - | qsu:112025393 | 504.982 |