Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2048 ATGAACGATCTTCTAACGGAATCATTTGAGATCCCGCGTGGCCAAGGTCATGGAGGTGGAGACATTGAGTTAGGAGCATATGCAAGGAACTCCGGAGAGCTGGGGTTGGATGGTTTCTTCAAAAAGGTTCAAGAGCTTGATAAACATTATGCTAAGCTGGATAAGCTTTTGCAAAAGCTCCAGGATGCTCACGAGGAGTCCAAATCTGTGACCAAGGCTCCTGCCATGAAGGCTATAAAACAGAGAATGGAGAAAGATGTTGATGAAGTTAAAAAAACTGCACATTACATAAAGGCCAAAATTGATGAACTGGACAAAGAGAATTTGACAAATAGGCAGAAGCCTGGTTGTGGAAAAGGATCCGGTGTTGACCGATCAAGAACAGCAACAACCATTTCATTAAAAAAGAAACTGAAGGAGAAGATGGCTGAATTTCAGACCCTTAGAGAGGCCATTCATCAAGAATATCGTGATGTTGTTGAGAGACGTGTGTTTACAGTAACGGGCACAAGAGCTGATGAGGAGACAATTGACAGATTAATTGAGACTGGTGACAGTGAGCAGATTTTCCAGAAGGCAATTCAGGAACAAGGACGAGGCCAGATAATGGACACCCTGGCCGAGATTCACGAGCGGCATGAAGCAGTTAGAGACGTTGAGAGGAAGCTTCTTGATTTACAACAGATATTTATGGATATTGCTGTGCTGGTCGATGCACAAGGAGACATGCTTGACAACATAGAATCACAGGTTTCAAGTGCAGTAGATCACGTGCAGCAAGGTAATACTGCCCTCCAGAAGGCGAAGAAACTACAAAGAAACTCTAGAAAATGGATGTGCATTGCAATCATGATACTTATTGTCGTTGTTATAATCATTGTTGTTGCTGTCATCAAGCCATGGGTTACCAAGAAGGGTGCTTAG 924 0.4318 MNDLLTESFEIPRGQGHGGGDIELGAYARNSGELGLDGFFKKVQELDKHYAKLDKLLQKLQDAHEESKSVTKAPAMKAIKQRMEKDVDEVKKTAHYIKAKIDELDKENLTNRQKPGCGKGSGVDRSRTATTISLKKKLKEKMAEFQTLREAIHQEYRDVVERRVFTVTGTRADEETIDRLIETGDSEQIFQKAIQEQGRGQIMDTLAEIHERHEAVRDVERKLLDLQQIFMDIAVLVDAQGDMLDNIESQVSSAVDHVQQGNTALQKAKKLQRNSRKWMCIAIMILIVVVIIIVVAVIKPWVTKKGA* 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2048 307 SMART tSNARE_6 201 268 IPR000727 -
Dod02g2048 307 PANTHER SYNTAXIN 3 298 IPR045242 -
Dod02g2048 307 PANTHER - 3 298 - -
Dod02g2048 307 Pfam Syntaxin 39 241 IPR006011 GO:0016020
Dod02g2048 307 Coils Coil 135 155 - -
Dod02g2048 307 Gene3D - 196 299 - -
Dod02g2048 307 Coils Coil 43 73 - -
Dod02g2048 307 SMART SynN_4 31 157 IPR006011 GO:0016020
Dod02g2048 307 CDD SynN 36 193 IPR006011 GO:0016020
Dod02g2048 307 ProSitePatterns Syntaxin / epimorphin family signature. 212 251 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dod02g2048 307 Pfam SNARE domain 242 294 IPR000727 -
Dod02g2048 307 Gene3D - 33 160 - -
Dod02g2048 307 SUPERFAMILY t-snare proteins 35 261 IPR010989 GO:0016020|GO:0016192
Dod02g2048 307 CDD SNARE_syntaxin1-like 205 267 - -
Dod02g2048 307 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 206 268 IPR000727 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2048 Dod-Chr2 38096187 38113584 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2048 1 307 SNARE and Associated Proteins AT3G03800 71.987 2.51e-156 437
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2048 K08486 - gmx:100306329 536.569