Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g2026 ATGAACGACCTCATGACCAAGTCATTCACCAGCTACGTGGATCTGAAGAAAGCAGCCATGAAAGATGTGGACTTGGAAGCAGGCCTTCCCCAACCGGGCGTGGAACTGAGCTCTTCCACCACCACCCTCATGGACACCGACATGGGTCTGTTCCTGGAAGAGGCGGAGAAGGTGAAAAGCGAGATGGGAAACCTGCGTGACATACTGGGAAGGCTCCAACAGGCCAATGAAGAGGGCAAGTCCCTTCACAAGCCCGACGCCCTGAAATCCCTGAGAAACAGGATCAATGCCGACATTGTGACGGTGCTGAAGAAGGCGAGGGCGATCAGGACCCAGCTGGAAGACATGGACCGCGCCAATGCTGCTAACAGGAGGCTCTCAGGGCTCAAAGATGGCACCCCAGCGATCTACAGGACCAGGATTGCGGTCACCAATGGACTGCGCAAGAAGCTTAAGGAGCTGATGATGGAGTTTCAAGGGCTGAGGCAGAGGATGATGACTGAGTACAAGGACACAGTGGGGAGAAGGTACTTCACGGTGACGGGGGAGTACCCTGATGAGGAAGTGATTGAGAAGATTATATCGAATGGGGATGAGGAGTTTTTGGGCAAGGCCATACAGGAGCATGGGAGGGGGAAGGTGCTGGAGACTGTGGTGGAGATACAGGACAGGCATGACACGGCCAAAGAGGTCGAGAAGAGCCTGCTGGAGCTGCATCAGGTGTTCCTGGACATGGCCGTGATGGTGGAGGCACAGGGTGAGAAGATGGATGACATTGAGCACCACGTGCTTCATGCTTCTCACTATGTCAAGGACGGGACCAAGAATCTCCAGACTGCCAAGAAGTACCAGACGAGCAGCAGGAAGTGCATGTGCATTGGAATCATACTTCTGCTGATTCTGATTCTCGTAATTGTTATCCCCGTTGCCACCAGTTTAAGCAGTTCTTGA 951 0.5363 MNDLMTKSFTSYVDLKKAAMKDVDLEAGLPQPGVELSSSTTTLMDTDMGLFLEEAEKVKSEMGNLRDILGRLQQANEEGKSLHKPDALKSLRNRINADIVTVLKKARAIRTQLEDMDRANAANRRLSGLKDGTPAIYRTRIAVTNGLRKKLKELMMEFQGLRQRMMTEYKDTVGRRYFTVTGEYPDEEVIEKIISNGDEEFLGKAIQEHGRGKVLETVVEIQDRHDTAKEVEKSLLELHQVFLDMAVMVEAQGEKMDDIEHHVLHASHYVKDGTKNLQTAKKYQTSSRKCMCIGIILLLILILVIVIPVATSLSSS* 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g2026 316 Gene3D - 48 176 - -
Dod02g2026 316 Pfam SNARE domain 255 306 IPR000727 -
Dod02g2026 316 ProSitePatterns Syntaxin / epimorphin family signature. 224 264 IPR006012 GO:0005484|GO:0006886|GO:0016020
Dod02g2026 316 Gene3D - 214 313 - -
Dod02g2026 316 Coils Coil 55 75 - -
Dod02g2026 316 PANTHER SYNTAXIN 4 309 IPR045242 -
Dod02g2026 316 CDD SynN 48 205 IPR006011 GO:0016020
Dod02g2026 316 Coils Coil 144 164 - -
Dod02g2026 316 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 218 280 IPR000727 -
Dod02g2026 316 SMART tSNARE_6 213 280 IPR000727 -
Dod02g2026 316 CDD SNARE_syntaxin1-like 217 279 - -
Dod02g2026 316 Pfam Syntaxin 51 253 IPR006011 GO:0016020
Dod02g2026 316 PANTHER SYNTAXIN-RELATED PROTEIN KNOLLE 4 309 - -
Dod02g2026 316 SUPERFAMILY t-snare proteins 46 273 IPR010989 GO:0016020|GO:0016192
Dod02g2026 316 SMART SynN_4 43 170 IPR006011 GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g2026 Dod-Chr2 37368466 37369853 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g2026 1 316 SNARE and Associated Proteins AT1G08560 65.409 1.12e-136 388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g2026 K08486 - gmx:100816016 511.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod02g2026 02 37368466 37369853 Dod06g1066 06 13884541 13889935 PCT