Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1961 ATGGCTTCACGAAGAATTGCATCTTCTCTTATTCGATCTTCCCTCCGTCGATCTGCATCCAAATCCTCCATCCCCACCTCCTCCACCCCAAGGCTCTCCTCTCCATCCCTTTTGCGTCGCCCTTCTCCCTACGGCTACCTCCTCAACCGCGTTGCCCACTACGCCACGGCAGTCGCCTCTGCGTCGCCTCCCCCTACAGCCAATAAGGAGGTCCCCGGTGGCGGAAAGATCACCGACGAGTTCACTGGAAAGGGTGCGATCGGGCAAGTTTGCCAGGTCATTGGTGCCGTTGTCGATGTCCGATTTGAGGAGGGCTTGCCGCCGATCCTCACGGCGCTCGAGGTCTTGGACCACTCGGTACGGCTGGTGTTGGAAGTGGCCCAGCATTTGGGTGAGGGCGTCGTTCGGACCATTGCTATGGACGGCACTGAAGGGCTCGTTAGGGGCAGCCGCGTGCTCAACACTGGGTCCCCTATCACTATTCCAGTTGGTAGGGCTACCCTTGGCCGCATCATGAATGTCATTGGAGAGCCTATTGATGAGAAGGGTGAAATAAAAACTGAGCATTTTTTGCCCATTCACAAAGAAGCTCCCGCTTTTGTTGACCAAGCAACTGAACAGCAGATTCTGGTTACGGGAATCAAGGTTGTTGATCTACTTGCACCATACCAAAGAGGAGGAAAGATTGGTTTGTTTGGTGGTGCTGGTGTAGGAAAAACTGTGCTTATTATGGAACTTATTAACAATGTTGCAAAAGCTCATGGTGGTTTCTCTGTGTTTGCTGGTGTTGGAGAACGAACCCGTGAGGGTAATGACTTGTACAGAGAAATGATTGAGAGTGGTGTCATTAAGCTTGGGGATAAGCAGGGCAAGACTGTGCTTCTTTTCATTGACAATATTTTCCGTTTTACTCAAGCCAACTCAGAGGTGTCTGCATTGCTTGGTCGTATACCATCTGCTGTTGGTTACCAGCCAACCTTGGCTACTGATCTTGGAGGTCTTCAAGAACGTATTACAACCACCAAGAAGGGTTCAATTACCTCTGTCCAAGCTATATATGTGCCTGCTGATGACTTGACCGATCCTGCTCCTGCTACCACCTTTGCTCACTTGGATGCTACGACAGTGTTATCCCGACAGATCTCGGAGCTGGGTATCTACCCTGCTGTGGATCCCTTAGATTCTACATCTCGTATGCTTTCCCCACTTATTTTGGGGGATGACCACTATGAGACTGCTCGTGGTGTACAAAAAGTGCTTCAAAACTACAAGAATCTTCAGGATATCATTGCCATTTTGGGAATGGATGAGCTCAGTGAAGATGATAAATTGACTGTTGCCCGTGCACGGAAAATCCAAAGGTTCCTAAGTCAGCCTTTCCATGTTGCAGAAGTTTTCACTGGTGCCCCTGGCAAATATGTAGAATTGAAGGAGAGCATTAACAGCTTCCAGGGTGTGTTGGATGGAAAGTACGATGATCTCCCAGAACAATCATTTTATATGGTTGGAGGCATTGAAGAGGTCCTTGCAAAGGCAGAGAAGATTGCTAAGGAATCAGCGTCTTAA 1566 0.4917 MASRRIASSLIRSSLRRSASKSSIPTSSTPRLSSPSLLRRPSPYGYLLNRVAHYATAVASASPPPTANKEVPGGGKITDEFTGKGAIGQVCQVIGAVVDVRFEEGLPPILTALEVLDHSVRLVLEVAQHLGEGVVRTIAMDGTEGLVRGSRVLNTGSPITIPVGRATLGRIMNVIGEPIDEKGEIKTEHFLPIHKEAPAFVDQATEQQILVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDKQGKTVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPAPATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPLILGDDHYETARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVAEVFTGAPGKYVELKESINSFQGVLDGKYDDLPEQSFYMVGGIEEVLAKAEKIAKESAS* 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1961 521 Gene3D - 400 521 IPR024034 -
Dod02g1961 521 MobiDBLite consensus disorder prediction 1 37 - -
Dod02g1961 521 Gene3D - 287 399 IPR027417 -
Dod02g1961 521 SMART AAA_5 225 460 IPR003593 -
Dod02g1961 521 Pfam ATP synthase F1 beta subunit 1 50 IPR020971 GO:0000275|GO:0005524|GO:0006754|GO:0016887
Dod02g1961 521 CDD F1-ATPase_beta 158 402 - -
Dod02g1961 521 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 403 IPR027417 -
Dod02g1961 521 Gene3D - 159 286 IPR027417 -
Dod02g1961 521 Pfam ATP synthase alpha/beta family, beta-barrel domain 90 156 IPR004100 GO:0046034|GO:1902600
Dod02g1961 521 PANTHER ATP SYNTHASE 3 291 - -
Dod02g1961 521 MobiDBLite consensus disorder prediction 1 36 - -
Dod02g1961 521 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 288 397 IPR000194 GO:0005524
Dod02g1961 521 CDD ATP-synt_F1_beta_C 404 511 - -
Dod02g1961 521 CDD ATP-synt_F1_beta_N 86 159 - -
Dod02g1961 521 Gene3D ATP synthase, F1 beta subunit 1 54 IPR042079 -
Dod02g1961 521 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 84 158 IPR036121 GO:0046034|GO:1902600
Dod02g1961 521 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 3 291 - -
Dod02g1961 521 Hamap ATP synthase subunit beta [atpB]. 85 515 IPR005722 GO:0015986|GO:0045261|GO:0046933
Dod02g1961 521 ProSitePatterns ATP synthase alpha and beta subunits signature. 388 397 IPR020003 GO:0005524
Dod02g1961 521 PANTHER ATP SYNTHASE 287 520 - -
Dod02g1961 521 Gene3D - 76 158 - -
Dod02g1961 521 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 400 516 - -
Dod02g1961 521 PIRSF ATPase_subunit_beta 6 289 - -
Dod02g1961 521 PIRSF ATPase_subunit_beta 284 521 - -
Dod02g1961 521 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 213 284 IPR000194 GO:0005524
Dod02g1961 521 PANTHER ATP SYNTHASE SUBUNIT BETA, MITOCHONDRIAL 287 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1961 Dod-Chr2 30835239 30838818 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1961 123 458 Primary Pumps ATPases(2) AT1G20260 27.296 1.81e-24 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1961 K02112 - apro:F751_3325 682.559