Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1920 ATGAAGATTTTCGTGAAGACTCTGAAAGGGACGCACTTCGAAATTGAAGTGACTCCCTCCGACACGGTTTCTGAAGTTAAGAAGAGTATAGAAACTGTTCAGGGTGCAGATGTCTATCCTGCAGCGCAGCAAATGCTTATTCATCAAGGAAAAGTTCTCAAGGATGGCACAACCTTGGAAGAAAATAAAGTAGCTGAAAATAGTTTTATTGTGATTATGCTATCGAAGACTAAGAGCTCATCTGGTGAAGGATCTTCTACAACTACACCTTCAGCTAAGGCACCGCAGACAAGTGCAACTCCTACTTCAGTCTCTATGTCAACTGTGCAAGCTCCTGTAGCAACGGGGGCATCGCTTGCGGCTGGTACTCCACCAGCATCATCACCTGCTCCTGCTCCTGCTCCTGCTCCGTCTCCTGCTCCCGCTCCTGCTCCTGCTCCGGCAGTGGCTCCTTTATCTTTGGGTTCTGCTATTGCAGGGTCTGATATATATGGGCAGGCAGCATCCAATCTTGTTGCTGGAAGCAACTTGGAGGAAACAATTCAGCAAATCCTTGATATGGGTGGAGGGAGCTGGGAGAGGGATACTGTTGTTCGTGCTCTTCGTGCTGCTTACAACAACCCTGAAAGAGCTGTTGAATATTTGTACTCAGGGATTCCGGAGCAAGCTGAAGCTCCACCTGTGGCCCGAGCGCCTGCAAGTGCGCCTGCAAGTGCACAACCTGTAAATCCTTCAGCTGGTGCTCCACAAGCAGCCCAACCATCGCCTGTTTCATCCGGTGGGCCTAATGCTAATCCTTTAGACCTCTTTCCGCAGGGCCTTCCCAATGTTGGTTCGGGTGCTGCGGGTGCTGGCTCTTTAGAATTTCTGCGCAACAGTCAACAGTTCCAAGCCTTGCGAGCTATGGTCCAGGCAAATCCACAAATATTGCAGCCTATGCTTCAAGAGCTTGGCAAACAAAATCCTCATCTTATGAGATTGATTCAAGAGCATCAAGTTGACTTCCTTCGCTTAATAAATGAGCCGGTGGAAGGTGGCGAGGGGAACATATTAGGACAGCTGGCTGGTGCCATGCCACAGGCAGTGACTGTCACTCCTGAGGAGCGGCAAGCAATTGAACGGCTTGAAGCAATGGGTTTTGATCGTGCACTCGTATTGGAGGTGTTCTTTGCTTGTAACAAAAACGAGGAACTGGCTGCGAACTACCTTTTAGATCACATGCATGAGTTTGACGAATAA 1239 0.4907 MKIFVKTLKGTHFEIEVTPSDTVSEVKKSIETVQGADVYPAAQQMLIHQGKVLKDGTTLEENKVAENSFIVIMLSKTKSSSGEGSSTTTPSAKAPQTSATPTSVSMSTVQAPVATGASLAAGTPPASSPAPAPAPAPSPAPAPAPAPAVAPLSLGSAIAGSDIYGQAASNLVAGSNLEETIQQILDMGGGSWERDTVVRALRAAYNNPERAVEYLYSGIPEQAEAPPVARAPASAPASAQPVNPSAGAPQAAQPSPVSSGGPNANPLDLFPQGLPNVGSGAAGAGSLEFLRNSQQFQALRAMVQANPQILQPMLQELGKQNPHLMRLIQEHQVDFLRLINEPVEGGEGNILGQLAGAMPQAVTVTPEERQAIERLEAMGFDRALVLEVFFACNKNEELAANYLLDHMHEFDE* 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1920 412 CDD UBA1_Rad23_plant 171 220 - -
Dod02g1920 412 Gene3D - 278 343 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dod02g1920 412 MobiDBLite consensus disorder prediction 79 114 - -
Dod02g1920 412 SUPERFAMILY UBA-like 174 228 IPR009060 GO:0005515
Dod02g1920 412 CDD UBA2_RAD23_plant 364 406 - -
Dod02g1920 412 TIGRFAM rad23: UV excision repair protein Rad23 1 411 IPR004806 GO:0006289
Dod02g1920 412 Pfam Ubiquitin family 3 76 IPR000626 GO:0005515
Dod02g1920 412 SUPERFAMILY Ubiquitin-like 1 79 IPR029071 -
Dod02g1920 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 365 406 IPR015940 -
Dod02g1920 412 MobiDBLite consensus disorder prediction 227 273 - -
Dod02g1920 412 SMART uba_6 368 405 IPR015940 -
Dod02g1920 412 SMART uba_6 177 217 IPR015940 -
Dod02g1920 412 SMART ubq_7 1 75 IPR000626 GO:0005515
Dod02g1920 412 Gene3D - 1 80 - -
Dod02g1920 412 Gene3D - 360 407 - -
Dod02g1920 412 SMART CBM 285 328 IPR006636 -
Dod02g1920 412 MobiDBLite consensus disorder prediction 238 262 - -
Dod02g1920 412 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 175 218 IPR015940 -
Dod02g1920 412 PANTHER UV EXCISION REPAIR PROTEIN RAD23 1 411 - -
Dod02g1920 412 MobiDBLite consensus disorder prediction 79 146 - -
Dod02g1920 412 PANTHER UV EXCISION REPAIR PROTEIN RAD23-RELATED 1 411 - -
Dod02g1920 412 ProSiteProfiles Ubiquitin domain profile. 1 79 IPR000626 GO:0005515
Dod02g1920 412 MobiDBLite consensus disorder prediction 126 146 - -
Dod02g1920 412 PRINTS DNA repair protein Rad23 signature 313 335 IPR004806 GO:0006289
Dod02g1920 412 PRINTS DNA repair protein Rad23 signature 379 393 IPR004806 GO:0006289
Dod02g1920 412 PRINTS DNA repair protein Rad23 signature 394 409 IPR004806 GO:0006289
Dod02g1920 412 PRINTS DNA repair protein Rad23 signature 362 378 IPR004806 GO:0006289
Dod02g1920 412 Pfam UBA/TS-N domain 177 215 IPR015940 -
Dod02g1920 412 Pfam UBA/TS-N domain 368 403 IPR015940 -
Dod02g1920 412 Pfam XPC-binding domain 287 342 IPR015360 GO:0003684|GO:0006289|GO:0043161
Dod02g1920 412 SUPERFAMILY XPC-binding domain 284 349 IPR036353 GO:0003684|GO:0006289|GO:0043161
Dod02g1920 412 SUPERFAMILY UBA-like 349 411 IPR009060 GO:0005515
Dod02g1920 412 CDD Ubl_Rad23 1 74 - -
Dod02g1920 412 Gene3D - 170 220 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1920 Dod-Chr2 28245199 28253778 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1920 1 74 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 41.892 5.72e-10 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1920 K10839 - gmx:100809066 584.719