Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1900 ATGCAACCCCAGAAGATGGGGTTCCCCGAGTACATCGAAGCATTGGAGGAAGAGAGAAGAAAAATCCAAGTCTTCGGCAGAGAGCTTCCTCTTTCCTTGGAGCTTGTCACGCAAGCCATTGAAGCGTGTAGGCAGCAGTTGTCTGGAACGTTGACGGAGTATAATTTGAATGGCCAATCGGAGTGTTCGGAGCAGACATCAACGGACGAAGGCCCTGTTTTTGAGGAGTTCATTCCCATCAAGAAAAGGCCATCACCTGGTTGTGATGAAGATGATGGTGGTGGTGGTGATGATGATGATGATGAGCAACATTCTCAAAGGCACAAAATTCCAAAGGATAACAAGAGTAGCAATGATAAGAAAAAATCGGATTGGCTTAGATCCGTTCAGTTGTGGAATCCTGATCCCCCTGCTGCCAAAGAGGATGTGCCTAGAAAGGCGTCTGTTGTGGAAGTGAAGACAAATGGCGGTGCTTTCCAGCCATTCCACAGAGAGGAGAGCACTGTTGGAAAGGCTAATGCTTCACCTGCTGGCAGAGCACCGTCTTCTCCACCGGTTCCGGCAACCAGTTCCACGGGACCGGCCGCAGGAAGCAATGCCGGAATCAGCAGAAGAGATCAGGATAAAGGACTGGCTCAGAGAAAGCAGCGCAGGTGCTGGTCACAGGAATTGCATAAACGGTTCTTGCATGCCCTTCAGCAGCTTGGAGGTGCAGGCGCCGCCACTCCAAAACAGATCAGGGAGCTAATGAAGGTTGATGGCCTCACAAATGATGAAGTCAAAAGTCATTTACAGAAATTTCGTCTCCACACCAGAAGACCAAGCCAAGTCATTCCCAACAATACCAATTCCCAAACTGCTCCTTTGTTCCTTGTGGGGAACATCTTTGTTCAACCACCAGAATATGCTGCGGTGGGTACCTCAACAGCATCAGGGGAAATGGCCACGGTTACAACAGCACCATCTGGAATTTATGCACCTGTGGCTGCACATCCTCCAGCTGCTCCACACACACCTGCTCCTCCTTCAGTAAAGAACCGTCAGTTCAAGCAGTTAGAGGTCTCTTCACATTCAGAAGAAAGGGCCAATCACAGTGAAGGTGCTGTCCATTCGAACTCCCCTGCCTCATCATCCTCTACACATACGACTACAACTTCACCTGGCTGTTAA 1170 0.4957 MQPQKMGFPEYIEALEEERRKIQVFGRELPLSLELVTQAIEACRQQLSGTLTEYNLNGQSECSEQTSTDEGPVFEEFIPIKKRPSPGCDEDDGGGGDDDDDEQHSQRHKIPKDNKSSNDKKKSDWLRSVQLWNPDPPAAKEDVPRKASVVEVKTNGGAFQPFHREESTVGKANASPAGRAPSSPPVPATSSTGPAAGSNAGISRRDQDKGLAQRKQRRCWSQELHKRFLHALQQLGGAGAATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRPSQVIPNNTNSQTAPLFLVGNIFVQPPEYAAVGTSTASGEMATVTTAPSGIYAPVAAHPPAAPHTPAPPSVKNRQFKQLEVSSHSEERANHSEGAVHSNSPASSSSTHTTTTSPGC* 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1900 389 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 212 272 IPR017930 -
Dod02g1900 389 MobiDBLite consensus disorder prediction 155 217 - -
Dod02g1900 389 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 385 IPR044787 GO:0003700|GO:0006355
Dod02g1900 389 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 215 270 IPR006447 GO:0003677
Dod02g1900 389 MobiDBLite consensus disorder prediction 367 389 - -
Dod02g1900 389 MobiDBLite consensus disorder prediction 100 124 - -
Dod02g1900 389 PANTHER MYB-LIKE TRANSCRIPTION FACTOR FAMILY PROTEIN 1 385 - -
Dod02g1900 389 MobiDBLite consensus disorder prediction 352 366 - -
Dod02g1900 389 SUPERFAMILY Homeodomain-like 213 273 IPR009057 -
Dod02g1900 389 MobiDBLite consensus disorder prediction 328 389 - -
Dod02g1900 389 MobiDBLite consensus disorder prediction 184 198 - -
Dod02g1900 389 Gene3D - 214 272 - -
Dod02g1900 389 MobiDBLite consensus disorder prediction 78 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1900 Dod-Chr2 27417413 27419681 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1900 10 330 G2-like Transcription Factor Family AT1G68670 50.000 5.04e-83 256
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Dod02g1900 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1900 - - adu:107491291 472.626