Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1893 ATGGATGGAGGAAGCTCCATAGACGAAAGCACCACATGCACAAATGACTCGCTTTCCATAACCCTAACGCCGGCGACAGCCGCCTCACCATTCACCGCCACGTCGAAGAAGCTGTCGCCTCCGCCGCCGAACAGCTTATGCCGTGTTGGCAGCGGCGCCAGCACGATTGTGGATCCGGACATCGTCGGCGGCGCAACCACCGAAGCCGAGTCCCGAAAACTCCCTTCCTCCAAGTACAAAGGAGTGGTGCCCCAGCCAAACGGTCGCTGGGGTGCTCAGATTTACGAGAAGCACCAGCGCGTTTGGCTGGGAACCTTCAACGAGGAGGACGAGGCCGCCAGAGCCTACGACATCGCGGCTCAGCGGTTCCGCGGCAAGGACGCCGTCACCAACTTCAAGCCCCTCGGTGGCAGCGTAACAGCGGAGGACGGAGGCGATGGCGACGAAGATTTCGAGGCCGAGTTCCTCAACTCCCATTCGAAATCCGAGATCGTGGACATGCTGAGGAAGCACACGTACAATGACGAGATGGAGCAGAGCAAGCGGAGCCGCGGCCTCCTCGGGCGGCGGCTCAGCCGCGGCTGCTGGGCGGCGGGAAACGGGGCGGGGGCGATGTCGGCGGGCGCGTGCGGAGGGAAGGCGCGTGAGCAGCTGTTCGAGAAGGCCGTTACGCCGAGCGACGTAGGGAAGTTGAATCGGTTAGTTATACCGAAGCAGCACGCGGAGAAGCACTTTCCGTTGCAGAACGGTTGCGGCGGCGGAATCACGGCGGCCGCGAAGGGCGTTTTGCTGAACTTCGAGGACGTTGGAGGGAAGGTGTGGCGGTTTCGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTGCTCACGAAGGGGTGGAGCCGGTTCGTGAAGGAGAAGAACCTTAAAGCCGGTGACACGGTTTGTTTCCACCGGTCGAGCGGACCGGACCGGCAGCTGTATATTGATTGGAAAGCCAGGAGTGTTGTTGTTAGCAGTGAGATTGGGATGATCGGACCGGTTGGACCGGTTGTGGAGCCGGTTCAGATGGTTCGGCTCTTTGGGGTAAACATTCTGAAACTACCTGGGTCTGATGCTAATAATAACAATAATAACAGTGCTAATAATGCTAGTGCTTCTGTTGGTGGGTGCTGCAATTGGAAGAGGAGAGAGATGGAACCGTTTACATTAGAGTGTAGCAAGAAGCCTAAGATCATTGGAGCTTTGTAA 1230 0.5813 MDGGSSIDESTTCTNDSLSITLTPATAASPFTATSKKLSPPPPNSLCRVGSGASTIVDPDIVGGATTEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNEEDEAARAYDIAAQRFRGKDAVTNFKPLGGSVTAEDGGDGDEDFEAEFLNSHSKSEIVDMLRKHTYNDEMEQSKRSRGLLGRRLSRGCWAAGNGAGAMSAGACGGKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQNGCGGGITAAAKGVLLNFEDVGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSSGPDRQLYIDWKARSVVVSSEIGMIGPVGPVVEPVQMVRLFGVNILKLPGSDANNNNNNSANNASASVGGCCNWKRREMEPFTLECSKKPKIIGAL* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1893 409 SUPERFAMILY DNA-binding domain 77 133 IPR016177 GO:0003677
Dod02g1893 409 CDD AP2 77 132 IPR001471 GO:0003700|GO:0006355
Dod02g1893 409 Pfam B3 DNA binding domain 219 325 IPR003340 GO:0003677
Dod02g1893 409 ProSiteProfiles AP2/ERF domain profile. 78 133 IPR001471 GO:0003700|GO:0006355
Dod02g1893 409 MobiDBLite consensus disorder prediction 31 51 - -
Dod02g1893 409 PANTHER AP2/ERF AND B3 DOMAIN TRANSCRIPTION FACTOR 1 409 - -
Dod02g1893 409 SMART rav1_2 78 139 IPR001471 GO:0003700|GO:0006355
Dod02g1893 409 ProSiteProfiles B3 DNA-binding domain profile. 219 328 IPR003340 GO:0003677
Dod02g1893 409 CDD B3_DNA 218 313 IPR003340 GO:0003677
Dod02g1893 409 Gene3D - 208 333 IPR015300 -
Dod02g1893 409 Pfam AP2 domain 77 125 IPR001471 GO:0003700|GO:0006355
Dod02g1893 409 Gene3D AP2/ERF domain 77 134 IPR036955 GO:0003700|GO:0006355
Dod02g1893 409 SUPERFAMILY DNA-binding pseudobarrel domain 217 323 IPR015300 -
Dod02g1893 409 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 1 409 IPR044800 GO:0003700
Dod02g1893 409 SMART B3_2 219 328 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1893 Dod-Chr2 27105225 27106852 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1893 5 408 RAV Transcription Factor Family AT1G13260 56.265 1.09e-137 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-RAV Dod02g1893 B3 3.5e-28 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1893 K09287 - gmx:100801107 555.058