Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1888 ATGGCAGGACCATCATGGTTGGTGGACAAAAGTAGATTTGCAACCAAAATAAAGTGTGCATCAGGAAATTGTGATCCTAATGAAGTTGTTTGGAAAAGCAATCCTACCAGGGCCTGCCCAAATTGTGAACATGCTATTGACAACAGTGATGTAGGTCAAGAGTGGCCTGGCCTACCGAAAGGGGTAAAATTTGATCCATCCGATCAGGAGATAATCTGGCACTTACTTGCAAAAGCTGGTGTAGGAAATTTGAAACCTCATCCTTTCATTGATGAATTTATTACTACTCTTGAAGTGGATGATGGAATTTGTTATACTCATCCTCAACATTTACCTGGTGTTAAGCAAGATGGAAATGCTTCCCACTTCTTCCATAGATCAGTCAAGGCTTATAATACTGGCACTCGAAAGCGTCGAAGAATACATGATGAGGATTTTGGTGATGTCCGCTGGCACAAGACTGGAAGGACTAAACCAATCATCCTGAATGGGGTCCCAAAAGGCTGTAAAAAGATTATGGTTTTGTATACAAGCGCAGTTAGAGGAGGGAAGTCTGAGAAAACTAATTGGGTTATGCACCAGTATCACCTAGGTACAGAAGAAGATGAGAAAGAAGGAGAAGCCACTAACACCATCAATGCAACGACTGTGAAAGTGGATCCAGTCACTCCCAAATCTGTGACCCCTGAACCTCCTCGCAGTGAAAGGCAGTGTTCAGATCTAGACCTAGGGGAAGAAACACTTCGTTTTCTTGAGATGGATATGGATTGCTTAGAAGCACTTCAAGCGGACCGTGAAGAGTTTACAGAAGAAAATCTGGCATTACTAGAGACTCAACGTAATAAAGGGATGGATAATAAGGAAAATAATGCTGATGAAGGCCAACAAGGGTGTGATATTGAGTCACAGAATTTTTTTGATTCACAAGAAATGGCCGACGCAATGCCCTGGTGTGAAGAGATCCTTCAAAGCCAATCTCCCAACAGAGATGGTAAAAATGGCAAGGACCAACCCAGTCTATCTGATTATGCTCATCTAGGACCAGAGCAGTTAAAGAAGGACATTGAGGAGTGCCAAAATCTTGTCCTTGATGAGAAAAATGATAAGAACCGACCTGGTCTATCTTTCGATGCTCATCTAGGACCAGCGAATCAGAATCAAGAAATTGTTGAGTACCAGAATCTTGCCCCTGATGAGAAAAGTGATAAGGACCAACCGAGTCTATCTGGTGATGCCCATCCTGAACCAGAGGATCTCAACAAGGATACTGAGGACTGCCAAAATCTTGACCTTGACTCTGCAAATATAGAGCGTGATACGCCTCCAGAGCATCGGCTAAGTCAGCTGGATTTTAGTTCACAGGACAGCTATACTGCCTGGGGTTACAGCATGGCAGGAAACTAA 1404 0.4323 MAGPSWLVDKSRFATKIKCASGNCDPNEVVWKSNPTRACPNCEHAIDNSDVGQEWPGLPKGVKFDPSDQEIIWHLLAKAGVGNLKPHPFIDEFITTLEVDDGICYTHPQHLPGVKQDGNASHFFHRSVKAYNTGTRKRRRIHDEDFGDVRWHKTGRTKPIILNGVPKGCKKIMVLYTSAVRGGKSEKTNWVMHQYHLGTEEDEKEGEATNTINATTVKVDPVTPKSVTPEPPRSERQCSDLDLGEETLRFLEMDMDCLEALQADREEFTEENLALLETQRNKGMDNKENNADEGQQGCDIESQNFFDSQEMADAMPWCEEILQSQSPNRDGKNGKDQPSLSDYAHLGPEQLKKDIEECQNLVLDEKNDKNRPGLSFDAHLGPANQNQEIVEYQNLAPDEKSDKDQPSLSGDAHPEPEDLNKDTEDCQNLDLDSANIERDTPPEHRLSQLDFSSQDSYTAWGYSMAGN* 468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1888 467 MobiDBLite consensus disorder prediction 395 445 - -
Dod02g1888 467 Coils Coil 258 278 - -
Dod02g1888 467 MobiDBLite consensus disorder prediction 324 344 - -
Dod02g1888 467 Gene3D NAC domain 67 225 IPR036093 GO:0003677|GO:0006355
Dod02g1888 467 MobiDBLite consensus disorder prediction 446 461 - -
Dod02g1888 467 MobiDBLite consensus disorder prediction 278 298 - -
Dod02g1888 467 Pfam No apical meristem (NAM) protein 59 197 IPR003441 GO:0003677|GO:0006355
Dod02g1888 467 SUPERFAMILY NAC domain 43 203 IPR036093 GO:0003677|GO:0006355
Dod02g1888 467 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 398 461 - -
Dod02g1888 467 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 2 207 - -
Dod02g1888 467 PANTHER SUPPRESSOR OF GAMMA RESPONSE 1 210 367 - -
Dod02g1888 467 ProSiteProfiles NAC domain profile. 58 218 IPR003441 GO:0003677|GO:0006355
Dod02g1888 467 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 2 207 IPR044799 GO:0003700
Dod02g1888 467 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 398 461 IPR044799 GO:0003700
Dod02g1888 467 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 210 367 IPR044799 GO:0003700
Dod02g1888 467 MobiDBLite consensus disorder prediction 365 467 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1888 Dod-Chr2 26738595 26744380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1888 26 231 NAC Transcription Factor Family AT1G28470 50.472 9.70e-66 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Dod02g1888 NAM 4.9e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1888 - - adu:107491284 615.15