Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1885 ATGAAAAAAGAAGAAGATCAAGGGCAGTGTTCTTTCCAAGCGATCCACAACACCATTCAAAGCTACCAGGAGCAGCTACTACTTCAGCAGCAGATGCAGCATCATCATCAAAACGGTGAGATCTTTGGAGGACGTGGTGGTGGAAGAGGATTGATATTCCCGGAAGTTCCGCCAATCAGCTTGCAAGCACCATGGTCCATGCCACCGGTTCACCCCTACGACCCAGCCGGTTCGGTTCACTATGCTGCAGCCGCCACCACCAACAACCACCATCATGACCCTTTTCTTGTACCTCCCGGCCCGGCAGCACCTTCACCATACGCAAGCTTTCTCAACAGAAGGGTCCCTTCTCTGCAGCTTGCATACGAGGGCCCTTCCTCTGAACATCTCAGGATCATATCTGATACCCTTGGACCCATGGTTCAACACGGTTCGGCTCCCTTTGGGCTCCAGGCCGAGTTAGGCAAGATGACTGCCCAAGAAATCATGGAGGCAAAGGCTCTTGCGGCCTCCAAGAGTCACAGCGAGGCTGAAAGGAGACGCAGAGAGAGAATCAATAACCACCTCGCCAAGCTCCGCAGCTTGTTGCCCAACACAACCAAGACAGATAAGGCTTCTTTGCTTGCTGAAGTGATTCAGCATGTGAAGGAACTGAAGCGTCAAACTTCGTTGATAGCAGAAACGAGTCCAGTGCCTACTGAGGCTGATGAGTTGACGGTGGATACAGCTGATGAGGATGGGAAGTTTGTGATCAAGGCCTCGCTGTGCTGTGAAGACAGGTCAGATCTCTTACCTGACCTTATCAAGACCTTGAAAGCGTTGAGGTTGAGAACCCTCAAGGCTGAGATCACAACCCTTGGTGGGCGCGTGAAGAACGTGCTCTTCATCACTGGGGAAGAAGAATCAAGTTGCAGTGGAGAGCAAAGCCTTCAGCAGCAGCAACAGTATTGTATTAGCTCAATACAAGAAGCACTCAAGGCAGTGATGGAGAAAGGTGGTGGGGATGAATCAGCTTCTGGGAATGTTAAGAGGCAAAGGACGAATATCAATATCCTTGAACAAAGGTCTTTATGA 1074 0.5056 MKKEEDQGQCSFQAIHNTIQSYQEQLLLQQQMQHHHQNGEIFGGRGGGRGLIFPEVPPISLQAPWSMPPVHPYDPAGSVHYAAAATTNNHHHDPFLVPPGPAAPSPYASFLNRRVPSLQLAYEGPSSEHLRIISDTLGPMVQHGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAETSPVPTEADELTVDTADEDGKFVIKASLCCEDRSDLLPDLIKTLKALRLRTLKAEITTLGGRVKNVLFITGEEESSCSGEQSLQQQQQYCISSIQEALKAVMEKGGGDESASGNVKRQRTNINILEQRSL* 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1885 357 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Dod02g1885 357 PANTHER TRANSCRIPTION FACTOR BHLH30 83 352 IPR045847 GO:0003700|GO:0006355
Dod02g1885 357 CDD bHLH_AtAIG1_like 164 241 - -
Dod02g1885 357 Gene3D - 164 225 IPR036638 GO:0046983
Dod02g1885 357 PANTHER TRANSCRIPTION FACTOR BHLH30 83 352 - -
Dod02g1885 357 SMART finulus 175 224 IPR011598 GO:0046983
Dod02g1885 357 Pfam Helix-loop-helix DNA-binding domain 172 218 IPR011598 GO:0046983
Dod02g1885 357 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 225 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1885 Dod-Chr2 26441125 26445115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1885 17 355 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 57.027 5.43e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod02g1885 HLH 2.5e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1885 - - jre:108993280 446.047