Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod02g1859 ATGGAGAAAGATCACAACTATTCGGCACCCATGCCTCCTAGTTTCAACACGCTGGACTACTCTCTTGATCACAACCACCACCCTCAACATCTCTATCCACAAAATCAACAACAACAACACCACCTCATGAAGTTTCGAGTGGGCGAAACGTCCGGGGAACACAACAGCAACGGGACAGTGGATTACATCCCACAACAACAACAACACCACCAGCAACTACAACTACCGCCGCCGCCACAAATATCGCCGCCGCCGCCGTGCTTCTATGGTACTGCCTCTTCTTTTGACAAACTCAGTTTTGCGGATGTGATGCAGTTTGCAGATTTTGGACCCAAGCTGGCCTTAAACCAAGGCAAGACTAGCGAAGAACCCGGGCTCGACCCGGTGTACTTCCTCAAGTTTCCCGTGTTAAACGACAAGATGGAGGACCAGAACTTGATGGTGAACCCAGAAAGTGGTGGTGTTGGAGAAGCAGAAAACAATGATGAGAGATTCAACAACGTTGTAAGCGTGGAAGACCAGTCGAGGGCAGGTGCAGGGGCAGATGAAGGAGAGGGAATGATGAGAGAAGATGAAGAGACTCGGGTTTCCGATGACACCAACTCGGTGCAGCTTCGCTTTCTTGGCCACGAGGAACTCCAGAAGAACTCTAATACGGTGCAGGAAAACAATAAGAACAAGAGGAAGAGGCCCAGAACGGTGAAGACAAGCGAAGAAGTTGAGAGCCAGCGCATGACACACATCGCGGTTGAAAGGAACCGAAGGAAGCAAATGAATGAGCATCTTCGTGTCCTCAGATCCCTCATGCCTGGTTCATACGTGCAAAGGGGTGATCAAGCTTCTATAATTGGGGGAGCTATAGAGTTTGTGAGGGAATTGGAGCAACTTCTTCAGTGCTTGGAGTCACAGAAGAGGAGGAGACTGCTTGGAGAGGCACAATCAAGGCAGGTTGGGGATTCAGCTCTTGCAGCGCAGCAGCCTCTTCAACCACCATTCTTTCCACCTTTGCCTTTGCCGAATGACCAGATGAAGCTTGTGGAGTTGGAGACTGGAATTCGCGAAGAAACCGCAGAGAGCAAGTCGTGTTTGGCTGATGTAGAAGTGAAGCTTCTGGGATTCGACGCGATGATCAAGATCCTATCAAGGAGGAGGCCAGGCCAATTGATCAAGGCCATTGCTGCCCTTGAAGATCTGCAGCTAATTATCCTTCACACCAACATCACCACCATTGAACAAACAGTTCTTTATTCTTTCAACGTTAAGGTGGCTGGTGATTCAAGGTTCACCGCGGAAGAAATAGCCAGCTCCGTTCAGCAGATATTCAGTTTTATCCATGCAAACACTAGCATGTGA 1353 0.493 MEKDHNYSAPMPPSFNTLDYSLDHNHHPQHLYPQNQQQQHHLMKFRVGETSGEHNSNGTVDYIPQQQQHHQQLQLPPPPQISPPPPCFYGTASSFDKLSFADVMQFADFGPKLALNQGKTSEEPGLDPVYFLKFPVLNDKMEDQNLMVNPESGGVGEAENNDERFNNVVSVEDQSRAGAGADEGEGMMREDEETRVSDDTNSVQLRFLGHEELQKNSNTVQENNKNKRKRPRTVKTSEEVESQRMTHIAVERNRRKQMNEHLRVLRSLMPGSYVQRGDQASIIGGAIEFVRELEQLLQCLESQKRRRLLGEAQSRQVGDSALAAQQPLQPPFFPPLPLPNDQMKLVELETGIREETAESKSCLADVEVKLLGFDAMIKILSRRRPGQLIKAIAALEDLQLIILHTNITTIEQTVLYSFNVKVAGDSRFTAEEIASSVQQIFSFIHANTSM* 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod02g1859 450 MobiDBLite consensus disorder prediction 1 40 - -
Dod02g1859 450 MobiDBLite consensus disorder prediction 183 198 - -
Dod02g1859 450 MobiDBLite consensus disorder prediction 213 244 - -
Dod02g1859 450 Coils Coil 210 230 - -
Dod02g1859 450 PANTHER TRANSCRIPTION FACTOR FAMA 39 450 IPR044283 GO:0003700|GO:0010052
Dod02g1859 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 242 308 IPR036638 GO:0046983
Dod02g1859 450 Pfam Helix-loop-helix DNA-binding domain 243 294 IPR011598 GO:0046983
Dod02g1859 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 242 293 IPR011598 GO:0046983
Dod02g1859 450 PANTHER TRANSCRIPTION FACTOR FAMA 39 450 - -
Dod02g1859 450 MobiDBLite consensus disorder prediction 10 40 - -
Dod02g1859 450 MobiDBLite consensus disorder prediction 173 198 - -
Dod02g1859 450 CDD bHLH_AtFAMA_like 245 312 - -
Dod02g1859 450 CDD ACT_UUR-ACR-like 376 440 - -
Dod02g1859 450 Gene3D - 233 308 IPR036638 GO:0046983
Dod02g1859 450 MobiDBLite consensus disorder prediction 222 244 - -
Dod02g1859 450 SMART finulus 248 299 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod02g1859 Dod-Chr2 25484307 25487607 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Dod02g1859 47 450 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G24140 59.903 6.61e-150 430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Dod02g1859 HLH 1e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod02g1859 - - gmx:100813515 590.882